generate protostr files with current config files #363

wen-bo-yang · 2016-11-05T10:22:21Z

Protostr directory added that path is "Paddle/python/paddle/trainer_config_helpers/tests/configs/protostr".
The directory save protostr files that genterate with current config files.
I modified check.md5 file and generate_protostr.sh files in order to check value of md5 between xxx.protostr and xxx.protostr.unitest and save new protostr files in protostr directory.

the name of dataprovider is "dataprovider_bow" in quick_start , but neme of dataprovider is "dataprovider_pow" below the "Define Python Data Provider in Configuration files"

if not export "LC_ALL=C", there are some warning that do not block the preprocess.sh, but maybe confused for some fresh man. e.g: perl: warning: Falling back to the standard locale ("C"). perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LANG = "zh_CN.UTF-8"

合并作者更新代码

…_protostr.sh

coveralls · 2016-11-05T10:39:58Z

Coverage remained the same at 62.35% when pulling f5fe91b on wen-bo-yang:develop into 93e4d0c on baidu:develop.

luotao1 · 2016-11-05T11:41:16Z

python/paddle/trainer_config_helpers/tests/configs/check.md5

-f586a548ef4350ba1ed47a81859a64cb  unused_layers.protostr
-8122477f4f65244580cec09edc590041  util_layers.protostr
-dcd76bebb5f9c755f481c26192917818  math_ops.protostr
+86c0815275a9d5eb902e23c6a592f58a ./protostr/img_layers.protostr.unitest


我理解的是这里不要放类似86c0815275a9d5eb902e23c6a592f58的一串数字了。应该直接比较./protostr/img_layers.protostr和./protostr/img_layers.protostr.unitest的md5值。因为这串数字也是之前我们对./protostr/img_layers.protostr用md5sum -c命令计算获得的，所以可以修改下trainer_config_helpers/tests/configs/run_tests.sh脚本，直接比较两个protostr的md5值。

@luotao1 了解，后续会修改为直接比对生成文件新文件和版本库中的protostr文件的的MD5值。

@luotao1 图片中是修改之后的代码，但是感觉没有原来的简洁。
烦请预先check下，如果没问题我在提交pull request
感谢

这个脚本的意思是：check.md5中可以只放img_layers.protostr（也不需要./protostr目录），然后脚本中自动寻找img_layers.protostr.unitest么？这样我觉得挺好的，check.md5会比较简洁，脚本看着也很容易懂。脚本的第14行是判断语句，那如果new_protostr不存在，是否要报错或者怎么样？

如果按图片中进行修改的话，就不需要check.md5文件。建立protostr目录是为了存放xxx.protostr和xxx.protostr.unitest文件(当前xxx.protostr文件个数23个)，目的是为了隔离生成的文件和configs中的文件分开，便于管理。
第5行指定对比文件目录
第6行查找版本库中生成好的xxx.protostr文件，由于可能存在多次运行run_tests.sh产生xxx.protostr.unitest文件，所以过滤了该文件，只将xxx.protostr文件作为对比文件。
10到23行为遍历对比文件和生成后的xxx.protostr.unitest文件的MD5值。相同为OK，反之为FAILED
脚本中第14行判断如果new_protostr不存在是会走eles分支，会输出新生成的文件可能不存在的警告，图片中没有贴出来。已经添加到我的代码里了。
我一会提一个pull request

coveralls · 2016-11-05T16:47:37Z

Coverage remained the same at 62.35% when pulling 5afa062 on wen-bo-yang:develop into 93e4d0c on baidu:develop.

emailweixu · 2016-11-05T18:49:53Z

Suggest not to use md5 for comparison. Using diff will be more helpful because it can show what goes wrong.

wen-bo-yang · 2016-11-06T04:03:11Z

OK, no problem. I will modify script and pull request.

coveralls · 2016-11-06T05:45:07Z

Coverage remained the same at 62.35% when pulling bbc3f07 on wen-bo-yang:develop into 93e4d0c on baidu:develop.

wen-bo-yang

删除 set -e
原因，当使用diff进行文件比对时，如果出现文件差异，则diff返回1非零，但set -e判断脚本中任何一个返回值非零是就结束，可能导致比对后续文件中断。如：如果有23对文件（46个），在对比第2对文件时，出现差异，脚本退出，不在继续比对后续文件。

coveralls · 2016-11-06T07:12:17Z

Coverage increased (+0.03%) to 62.377% when pulling 85a5f44 on wen-bo-yang:develop into 93e4d0c on baidu:develop.

reyoung · 2016-11-07T02:41:16Z

python/paddle/trainer_config_helpers/tests/configs/run_tests.sh

-            echo $new_protostr: FAILED!
-        else
+        diff $base_protostr $new_protostr -u
+        if [ $? -eq 0 ];then
            echo $new_protostr: OK!
        fi


其实这里直接就退出也无所谓。因为单测一个错了其他的也可以不执行了。
所以set -e是ok的。同时，后面的echo OK!也是不必要的了。而且，if [ -f ] 也是不必要的。出错就出错，直接返回一个错误值就好了。

diff不要是 -u，直接返回diff的是什么就好了。这样也给运行单测的人一些错误提示。

reyoung · 2016-11-07T02:43:00Z

python/paddle/trainer_config_helpers/tests/configs/check.md5

+9c038249ec8ff719753a746cdb04c026 ./protostr/layer_activations.protostr.unitest
+5913f87b39cee3b2701fa158270aca26 ./protostr/projections.protostr.unitest
+7334ba0a4544f0623231330fc51d390d ./protostr/shared_fc.protostr.unitest
+8b8b6bb128a7dfcc937be86145f53e2f ./protostr/shared_lstm.protostr.unitest


另外，既然用diff了。这个md5文件就没有啥用了，删了吧。

luotao1 · 2016-11-07T03:13:27Z

python/paddle/trainer_config_helpers/tests/configs/run_tests.sh

-        echo WARNING $new_protostr: NOT EXIST!
-    fi
+    diff $base_protostr $new_protostr
+    mv $new_protostr $protostr/$file.unitest.bak


为什么需要17行

在每次跑单侧是留下一个备份文件以.bak命名。

想让第二次比对的结果不一第一次跑出的结果直接对比。如第一次生成xxx.protostr.unitest文件后，在第二次用户没有删除该文件时，可能会存在新生成的xxx.protostr.unitest文件失败，但是第一次的结果又没有清空，此时对比可能是对比的前一次，为了避免该情况发生，每次都diff结束后，重新命名该文件为.bak

不需要留下备份文件吧 @reyoung

在第二次用户没有删除该文件时,可能会存在新生成的xxx.protostr.unitest文件失败：生成的时候，把原文件覆盖了就行了吧

coveralls · 2016-11-07T03:32:56Z

Coverage increased (+0.005%) to 62.354% when pulling defdce7 on wen-bo-yang:develop into 93e4d0c on baidu:develop.

coveralls · 2016-11-07T04:40:01Z

Coverage increased (+0.03%) to 62.377% when pulling cf0e5c4 on wen-bo-yang:develop into 93e4d0c on baidu:develop.

luotao1 · 2016-11-07T04:50:42Z

python/paddle/trainer_config_helpers/tests/configs/run_tests.sh

@@ -1,5 +1,17 @@
 #!/bin/bash
 cd `dirname $0`
+


空白的line 3和7可以删掉

* refine sparse momentum api and unittest (PaddlePaddle#126) * refine sparse momentum api and unittest * fix unittests bug * Remove main function in some unittest. * Update Mac OS X port * follow comments to fix bugs * Revise some word in build doc * Add automatic check AVX in CMake (PaddlePaddle#145) * Add automatic check AVX in CMake * Revise table format and some words in build docs * Fix cmake/FindAVX.cmake * Update build docs (PaddlePaddle#148) * Add automatic check AVX in CMake * Add indent in FindAVX.cmake * Revise table format and some words in build docs * Update build docs * Fix bug when only support AVX 2 (PaddlePaddle#150) In some situation, for instance, in the virtual machine, it could happen. * add scripts to build ubuntu install package. 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Ideally, we should remove the wrong versions when install. But it's not easy to do this with cmake. Change-Id: Ida8a8d60643ad9e42cf1c85776de9122d5ba1392 * Add matrix inverse (PaddlePaddle#240) * Add matrix inverse * report error when use parallel_nn to train recurrent_nn model (PaddlePaddle#335) * install the right python package version (PaddlePaddle#340) For multiple installation of paddle, there might be multiple versions of python package at opt/paddle/share/wheels/. We should install the right version. Ideally, we should remove the wrong versions when install. But it's not easy to do this with cmake. Change-Id: Ida8a8d60643ad9e42cf1c85776de9122d5ba1392 * Fix minor errors in instructions of building Paddle on Mac OS X (PaddlePaddle#347) * Fix bug and redundant code in hl_dso_loader.cc (PaddlePaddle#306) * Fix glog check type unmatch in Util.cpp (PaddlePaddle#353) * Fix glog check type unmatch in Util.cpp PaddlePaddle#352 * Add code coverage and coveralls (PaddlePaddle#296) * Add Issue template to guide user submit good issue (PaddlePaddle#354) * Add issue template * Update ISSUE_TEMPLATE.md * Update ISSUE_TEMPLATE.md * Rename * Rename * Typo * Typo * Typo * Typo * Follow comments * Follow comments * Add elementwise math operations (PaddlePaddle#343) * Add elementwise math operations This allows use to use expressions like: y=log(1+exp(x)) Also added unittests for ActivationFunction * Enforce keyword arguments for non-positional arguments * Add LogActivation to doc * include mkl_lapacke.h (PaddlePaddle#359) * Update ISSUE_TEMPLATE.md (PaddlePaddle#357) * add rdma cmake support (PaddlePaddle#284) * add rdma cmake support * move rdma related code to rdma.cmake * using find_package for swig (PaddlePaddle#334) * Use diff to compare config unittest (PaddlePaddle#363) Fix PaddlePaddle#342 * Fix SRL hang when exit. (PaddlePaddle#291) * Fix SRL hang when exit. * Error occurred when enable Async Load in TestDataProvider. * It because DataProvider is calling getNextBatchInternal in one thread, and destructing DataProvider in other thread. * Add wait routine in DataProvider destructing. * Also fix another bug, when destructing TestDataProvider and do not read any test data. Fix PaddlePaddle#286 * Follow comments, Use mutex is cool! * Follow comments * Add img_size for unit test * Fix bilinear interp bug * revert flags.cmake * Replace outputH to batchSize * Follow comments * Revise one word in ISSUE_TEMPLATE.md (PaddlePaddle#371) * abstract outputSize function in CNN-related layers (PaddlePaddle#314) * Add define for double getrf, getri (PaddlePaddle#381) * Add SumCost This allows user to implement any type of cost by summing over the output of non-cost layers. Change-Id: Ic55aaabbf0c1299e70b8e48a0effcc91f8f5bd29 * Add sum_cost to document And rebase Change-Id: I7ea234b3aa8fc70675af15d91db08242c43fb5ff * Remove Mac OS X build docs (PaddlePaddle#386) Currently, Paddle on Mac OS X is not deliberate testing through the different versions of Mac OS X and Clang. When all these things that we've done, we will reopen Mac build docs. * add python wrap for sppLayer * Cancelling Travis build with docs updates only. (PaddlePaddle#372) * fix deadlink in Chinese quick start doc. (PaddlePaddle#389) * add python-related unittest problem in faq document (PaddlePaddle#377) * Fix macOS quick start preprocess script. (PaddlePaddle#390) * Use `gshuf` instead of `shuf` in macOS * Fix PaddlePaddle#388 * fix floating-point overflow problem of tanh (PaddlePaddle#355) * py_paddle link zlib(PaddlePaddle#393) * enable swig unittest in travis-ci (PaddlePaddle#394) * Init * Add numpy deps * Refine * fix some nvcc compile options (PaddlePaddle#392) * Follow comments * modify the format of diff information in protostr (PaddlePaddle#398) * Fix minior bug * add patch does not trigger travis ci * follow comments * Fix Travis Ci does not build when push patches (PaddlePaddle#399) * add getSize method for PoolProjection * Make matrix well-conditioned when unittest inverse * Implement setDiag() with BaseMatrix::assign() * Follow comments * follow comments * Update FindAVX.cmake (PaddlePaddle#404) * make AVX_FOUND is default value to WITH AVX * let AVX_FLAG always keep -mavx flag since compiler can build binary with -mavx even CPU does not support avx. * some tiny fixs (PaddlePaddle#406) * some tiny fixs * use VLOG(3) * [Work in Progress] Update cluster_train.md (PaddlePaddle#391) Update cluster_train.md for easier understanding * Fix memory leak in image classification demo, which is caused by dataprovider (PaddlePaddle#323) * the memory leak is inside one pass. * Update * Delelte old protostr * Follow comments * add some code comments for SppLayer * Update * Fix a bug * initial take on deconv layers * added convTrans test and python components * added more test on convTrans layer and comments * Refactor ExpandConvTransLayer to share codes with ExpandConvLayer * refactored ExpandConvLayer and ExpandConvTransLayer with ConvBaseLayerCpu * fixed a bug in refactoring ExpandConv/TransLayer * add another small test in test_LayerGrad for convTransLayer * Revised deconv implementations according to luotao1 * rebase deconv implementation with develop branch and resolve conflicts with pull#218 commit 45c81a4 * deconv layer implementation modification following luotao1 comments * fix a small bug in ConvTransLayerBase in config_parser.py * deconv implementation mionr changes in ConvBaseLayer.cpp and config_parser.py * minor changes on deconv per luotao1 comments * Refactored imageSize in ConvBaseLayer to MathUtil * minor change to convTransLayer test in test_LayerGrad * minor changes on deconv implementation and add protostr test for deconv layer * fixed a bug in parse_conv in config_parser.py * Generate bilinear protostr via Linux * set mixedlayer output size according to input operator (PaddlePaddle#414) * set mixedlayer output size according to input operator * change from num_channel to num_channels for conv_operator (the old one is really misleading because all the others are num_channels) * also changed the arg name in projections.py * change the act.name for LinearActivation() to "linear" so that it won't fail in hl_activetype; also fix the hasinputsset in submodel * Revise code * use yapf to format python code, add style config file * Add checkout name for Dockerfile * Because in dockerhub, we cannot set the `docker build `running directory, we could only use `git clone` command to get the latest code if we put `Dockerfile` in subdirectory * But the `git clone` will checkout the default branch only, so here we add a `ENV` in Dockerfile to checkout special branch or tag in git repo. We could change it to `V0.9.0` tag when it release. * '*' operator overload for LayerOutput Making '*' support the multiplication between a scalar and LayerOutput Also changing '+' to support adding between a vector and a scalar. Change-Id: I7daf35590dc2b2f855a29d9ef43ac57979442e0f * change hlactivetype instead of act.name * fix bug in sum_cost * fix test_layerHelpers unittest error * change python code style to pep8 * Fix bug in multple objects in define_py_sources * Add unittest for split datasource * Fix PaddlePaddle#436 * multi_binary_cross_entropy when ids vector is provided * copy the data when createSparseMatrix * format python code in demo, doc, doc_cn and paddle directories * format python code in python directory * modifications according to comments * Add pre-commit config file. * Add yapf hook to format python code. * Add Remove CRLF * Update pre-commit-config * Check all files by pre commit hooks * Bug fix in testing mode. * Refine clang-format for Paddle style * fix url of sub-pages * added resnet lstm architecture from GNMT * modify document directory structure in model config helpers * Revert "fix url of sub-pages" * Add ScalingProjection out = w * input where w is a parameter of size 1 Change-Id: Ife682d62323ceb1a20cbbf6269421b20a862d888 * Fix unittest Change-Id: Ic80845c892c96c37a0df0ddc433fe1aeaa5a9d1c * Fix forwardTest for ids in python swig. * unittest need to be added. But fix the bugs first. * Bumping up version number to v0.9.0a0 * Fix some problems in Debian build scripts. * Mount local Paddle instead of git clone from remote. * Use official chinese ubuntu source instead of 163 mirror. * Update dockerfile tags * Add version check for paddle * Refine ver2num function, add comments * Fix Debian package name in ubuntu install docs. * Fix PaddlePaddle#486 * Change demo datafile location by using CDN in baidu. * merge bugfix PaddlePaddle#593 and # 597 from develop branch * Bumping up version number * Add Release notes * Refine documentation in RELEASE.md * fix dead link for quick start * update * Fix Travis-CI build for release * Remove typo in documentation. * fix typo

Put the keys / secrets in for PaddlePaddle.org scripts to use

* fix peoples daily * revert msra

wen-bo-yang and others added 5 commits October 20, 2016 17:11

fix error in doc of quick_start

56f5a23

the name of dataprovider is "dataprovider_bow" in quick_start , but neme of dataprovider is "dataprovider_pow" below the "Define Python Data Provider in Configuration files"

Merge pull request #1 from baidu/develop

d08c877

合并作者更新代码

add protostr file for unitest and modify check.md and modify generate…

2b4ff3a

…_protostr.sh

add directory protostr

f5fe91b

wen-bo-yang mentioned this pull request Nov 5, 2016

Use original protostr for unittest of trainer_config_helper #342

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luotao1 reviewed Nov 5, 2016

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luotao1 assigned reyoung and luotao1 Nov 5, 2016

modify run_tests.sh do not use check.md5 file

5afa062

test

bbc3f07

wen-bo-yang added 2 commits November 6, 2016 05:54

modify run_test.sh use diff command, and deleted check_protostr_diff.sh

8989322

modiry run_test.sh use diff command

85a5f44

wen-bo-yang commented Nov 6, 2016

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reyoung requested changes Nov 7, 2016

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modify run_tests.sh file and delete check.md5 file

defdce7

luotao1 reviewed Nov 7, 2016

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modify run_test.sh delete mv command

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luotao1 reviewed Nov 7, 2016

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reyoung approved these changes Nov 7, 2016

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reyoung added the enhancement label Nov 7, 2016

reyoung added this to the 0.9.0 milestone Nov 7, 2016

reyoung merged commit c64cd6f into PaddlePaddle:develop Nov 7, 2016

luotao1 mentioned this pull request Nov 9, 2016

Python unit test is using md5sum, a command doesn't come with Mac OS X #344

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reyoung mentioned this pull request Nov 9, 2016

Update contribute_to_paddle.md #403

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zhhsplendid pushed a commit to zhhsplendid/Paddle that referenced this pull request Sep 25, 2019

Merge pull request PaddlePaddle#363 from PaddlePaddle/deploy-indexes-s3

d3914ae

Put the keys / secrets in for PaddlePaddle.org scripts to use

thisjiang pushed a commit to thisjiang/Paddle that referenced this pull request Oct 28, 2021

add mkldnn support (PaddlePaddle#363)

de98a1c

wangxicoding pushed a commit to wangxicoding/Paddle that referenced this pull request Dec 9, 2021

Fix peoples daily dataset (PaddlePaddle#363)

81e7286

* fix peoples daily * revert msra

AnnaTrainingG pushed a commit to AnnaTrainingG/Paddle that referenced this pull request Sep 19, 2022

modify lapstyle doc (PaddlePaddle#363)

f66de7f

AnnaTrainingG pushed a commit to AnnaTrainingG/Paddle that referenced this pull request Dec 6, 2023

Allow rotary embeddings for Bert (PaddlePaddle#363)

684196b

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generate protostr files with current config files #363

generate protostr files with current config files #363

wen-bo-yang commented Nov 5, 2016

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coveralls commented Nov 7, 2016

coveralls commented Nov 7, 2016

luotao1 Nov 7, 2016

generate protostr files with current config files #363

generate protostr files with current config files #363

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