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Bump the python group across 1 directory with 6 updates #94

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Bumps the python group with 6 updates in the / directory:

Package From To
netcdf4 1.7.1.post2 1.7.2
mypy 1.11.1 1.13.0
pylint 3.2.6 3.3.1
black 24.8.0 24.10.0
pytest 8.3.2 8.3.3
sphinx-autobuild 2024.4.16 2024.10.3

Updates netcdf4 from 1.7.1.post2 to 1.7.2

Changelog

Sourced from netcdf4's changelog.

since version 1.7.2 release

  • fix type hint for createEnumType (issue #1378)
  • add python 3.13 to windows wheel builds (PR #1377)

version 1.7.2 (tag v1.7.2rel)

  • add static type hints (PRs #1302, #1349)
  • Expose nc_rc_set, nc_rc_get (via rc_set, rc_get module functions). (PR #1348)
  • Add Variable.get_fill_value and allow fill_value='default' to set _FillValue attribute using default fill values. (issue #1374, PR #1375).
  • Fix NETCDF3 endian error (issue #1373, PR #1355).

version 1.7.1 (tag v1.7.1rel)

  • include nc_complex source code from v0.2.0 tag (instead of using submodule).
  • add aarch64 wheels.

version 1.7.0 (tag v1.7.0rel)

  • add support for complex numbers via auto_complex keyword to Dataset (PR #1295)
  • fix for deprecated Cython DEF and IF statements using compatibility header with shims for unavailable functionality (PR #1277)
  • use szip as the library name on Windows (PR #1304)
  • add support for MS-MPI MPI_Message detection (PR #1305)
  • fix for issue #1306 - surprising result when indexing vlen str with non-contiguous indices.
  • Fix bug in set_collective introduced in PR #1277 (collective mode was always set).

version 1.6.5 (tag v1.6.5rel)

  • fix for issue #1271 (mask ignored if bool MA assigned to uint8 var)
  • include information on specific object when reporting errors from netcdf-c
  • python 3.12 wheels added, support for python 3.7 removed.

version 1.6.4 (tag v1.6.4rel)

  • set path to SSL certificates internally, so https DAP URLs work with wheels (issue #1246, requires nc_rc_set function available starting with netcdf-c 4.9.1, plus bugfix in netcdf-c PR #2690). Added certifi as a dependency.
  • Added isopen method to MFDataset object to check if underlying files are open.

version 1.6.3 (tag v1.6.3rel)

  • Use nc_put_vars for strided writes for netcdf-c >= 4.6.2 (issue #1222).
  • _Unsigned="false" should be same as not having _Unsigned set (issue #1232). _Unsigned now must be set to "true" or "True" for variable to be interpreted as unsigned, instead of just having _Unsigned be set (to anything).

... (truncated)

Commits

Updates mypy from 1.11.1 to 1.13.0

Changelog

Sourced from mypy's changelog.

Mypy Release Notes

Next release

Change to enum membership semantics

As per the updated typing specification for enums, enum members must be left unannotated.

class Pet(Enum):
    CAT = 1  # Member attribute
    DOG = 2  # Member attribute
    WOLF: int = 3  # New error: Enum members must be left unannotated
species: str  # Considered a non-member attribute

In particular, the specification change can result in issues in type stubs (.pyi files), since historically it was common to leave the value absent:

# In a type stub (.pyi file)
class Pet(Enum):
# Change in semantics: previously considered members, now non-member attributes
CAT: int
DOG: int
# Mypy will now issue a warning if it detects this situation in type stubs:
# > Detected enum "Pet" in a type stub with zero members.
# > There is a chance this is due to a recent change in the semantics of enum membership.
# > If so, use `member = value` to mark an enum member, instead of `member: type`

class Pet(Enum):
# As per the specification, you should now do one of the following:
DOG = 1  # Member attribute with value 1 and known type
WOLF = cast(int, ...)  # Member attribute with unknown value but known type
LION = ...  # Member attribute with unknown value and unknown type

Contributed by Terence Honles in PR 17207 and Shantanu Jain in PR 18068.

Mypy 1.13

We’ve just uploaded mypy 1.13 to the Python Package Index (PyPI). Mypy is a static type checker for Python. You can install it as follows:

python3 -m pip install -U mypy

... (truncated)

Commits

Updates pylint from 3.2.6 to 3.3.1

Commits

Updates black from 24.8.0 to 24.10.0

Release notes

Sourced from black's releases.

24.10.0

Highlights

  • Black is now officially tested with Python 3.13 and provides Python 3.13 mypyc-compiled wheels. (#4436) (#4449)
  • Black will issue an error when used with Python 3.12.5, due to an upstream memory safety issue in Python 3.12.5 that can cause Black's AST safety checks to fail. Please use Python 3.12.6 or Python 3.12.4 instead. (#4447)
  • Black no longer supports running with Python 3.8 (#4452)

Stable style

  • Fix crashes involving comments in parenthesised return types or X | Y style unions. (#4453)
  • Fix skipping Jupyter cells with unknown %% magic (#4462)

Preview style

  • Fix type annotation spacing between * and more complex type variable tuple (i.e. def fn(*args: *tuple[*Ts, T]) -> None: pass) (#4440)

Caching

  • Fix bug where the cache was shared between runs with and without --unstable (#4466)

Packaging

  • Upgrade version of mypyc used to 1.12 beta (#4450) (#4449)
  • blackd now requires a newer version of aiohttp. (#4451)

Output

  • Added Python target version information on parse error (#4378)
  • Add information about Black version to internal error messages (#4457)
Changelog

Sourced from black's changelog.

24.10.0

Highlights

  • Black is now officially tested with Python 3.13 and provides Python 3.13 mypyc-compiled wheels. (#4436) (#4449)
  • Black will issue an error when used with Python 3.12.5, due to an upstream memory safety issue in Python 3.12.5 that can cause Black's AST safety checks to fail. Please use Python 3.12.6 or Python 3.12.4 instead. (#4447)
  • Black no longer supports running with Python 3.8 (#4452)

Stable style

  • Fix crashes involving comments in parenthesised return types or X | Y style unions. (#4453)
  • Fix skipping Jupyter cells with unknown %% magic (#4462)

Preview style

  • Fix type annotation spacing between * and more complex type variable tuple (i.e. def fn(*args: *tuple[*Ts, T]) -> None: pass) (#4440)

Caching

  • Fix bug where the cache was shared between runs with and without --unstable (#4466)

Packaging

  • Upgrade version of mypyc used to 1.12 beta (#4450) (#4449)
  • blackd now requires a newer version of aiohttp. (#4451)

Output

  • Added Python target version information on parse error (#4378)
  • Add information about Black version to internal error messages (#4457)
Commits

Updates pytest from 8.3.2 to 8.3.3

Release notes

Sourced from pytest's releases.

8.3.3

pytest 8.3.3 (2024-09-09)

Bug fixes

  • #12446: Avoid calling @property (and other instance descriptors) during fixture discovery -- by asottile{.interpreted-text role="user"}

  • #12659: Fixed the issue of not displaying assertion failure differences when using the parameter --import-mode=importlib in pytest>=8.1.

  • #12667: Fixed a regression where type change in [ExceptionInfo.errisinstance]{.title-ref} caused [mypy]{.title-ref} to fail.

  • #12744: Fixed typing compatibility with Python 3.9 or less -- replaced [typing.Self]{.title-ref} with [typing_extensions.Self]{.title-ref} -- by Avasam{.interpreted-text role="user"}

  • #12745: Fixed an issue with backslashes being incorrectly converted in nodeid paths on Windows, ensuring consistent path handling across environments.

  • #6682: Fixed bug where the verbosity levels where not being respected when printing the "msg" part of failed assertion (as in assert condition, msg).

  • #9422: Fix bug where disabling the terminal plugin via -p no:terminal would cause crashes related to missing the verbose option.

    -- by GTowers1{.interpreted-text role="user"}

Improved documentation

  • #12663: Clarify that the [pytest_deselected]{.title-ref} hook should be called from [pytest_collection_modifyitems]{.title-ref} hook implementations when items are deselected.
  • #12678: Remove erroneous quotes from [tmp_path_retention_policy]{.title-ref} example in docs.

Miscellaneous internal changes

  • #12769: Fix typos discovered by codespell and add codespell to pre-commit hooks.
Commits

Updates sphinx-autobuild from 2024.4.16 to 2024.10.3

Release notes

Sourced from sphinx-autobuild's releases.

Release 2024.10.03

2024.10.03

Release 2024.10.02

2024.10.02

Release 2024.09.19

2024.09.19

Release 2024.09.18

2024.09.18

Release 2024.09.17

2024.09.17

Release 2024.09.03

2024.09.03

Changelog

Sourced from sphinx-autobuild's changelog.

Changelog

unreleased

2024.10.03 - 2024-10-03

  • Improve error handling for failures in pre-build commands.

2024.10.02 - 2024-10-02

  • Show the changed paths that triggered the rebuild.

2024.09.19 - 2024-09-19

  • Fix path filtering on Windows by normalising path separators.
  • Filter various directories by default (.git, venv, etc).
  • Serve the correct directory when using make mode (-M).

2024.09.18 - 2024-09-18

  • Run Sphinx through the Python entry point rather than the binary on PATH.

2024.09.17 - 2024-09-17

  • Relax checks for paths that aren't required to exist.

2024.09.03 - 2024-09-03

  • Fix support for Python 3.9.
  • Fix running sphinx-autobuild via entry point scripts.
  • Run sphinx-build in a subprocess to mitigate autdoc issues.
  • Support the -M 'make mode' option for sphinx-build.

2024.04.16 - 2024-04-16

  • Add a missing dependency on watchfiles.
  • Adopt Ruff in place of flake8 and black.

2024.04.13 - 2024-04-13

... (truncated)

Commits
  • 86e2f37 Release 2024.10.03
  • 1771311 Improve handling for errors in pre-build commands (#181)
  • 5eedf72 Release 2024.10.02
  • 1743a43 Show which paths changed when rebuilding
  • 028cf60 Add missing from __future__ import annotations imports
  • f3146c1 Use -m sphinx build if supported
  • 49457de fixup! Fix path filtering on Windows
  • 2e4e6f7 Split show() into show_message() and show_command()
  • 829ec71 Restrict the release workflow to the @​sphinx-doc organisation
  • 4552a5f Release 2024.09.19
  • Additional commits viewable in compare view

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@dependabot
Bump the python group across 1 directory with 6 updates
d9796d7 
Bumps the python group with 6 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [netcdf4](https://github.com/Unidata/netcdf4-python) | `1.7.1.post2` | `1.7.2` |
| [mypy](https://github.com/python/mypy) | `1.11.1` | `1.13.0` |
| [pylint](https://github.com/pylint-dev/pylint) | `3.2.6` | `3.3.1` |
| [black](https://github.com/psf/black) | `24.8.0` | `24.10.0` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.3.2` | `8.3.3` |
| [sphinx-autobuild](https://github.com/sphinx-doc/sphinx-autobuild) | `2024.4.16` | `2024.10.3` |



Updates `netcdf4` from 1.7.1.post2 to 1.7.2
- [Release notes](https://github.com/Unidata/netcdf4-python/releases)
- [Changelog](https://github.com/Unidata/netcdf4-python/blob/master/Changelog)
- [Commits](https://github.com/Unidata/netcdf4-python/commits)

Updates `mypy` from 1.11.1 to 1.13.0
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.11.1...v1.13.0)

Updates `pylint` from 3.2.6 to 3.3.1
- [Release notes](https://github.com/pylint-dev/pylint/releases)
- [Commits](pylint-dev/pylint@v3.2.6...v3.3.1)

Updates `black` from 24.8.0 to 24.10.0
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](psf/black@24.8.0...24.10.0)

Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)

Updates `sphinx-autobuild` from 2024.4.16 to 2024.10.3
- [Release notes](https://github.com/sphinx-doc/sphinx-autobuild/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx-autobuild/blob/main/NEWS.rst)
- [Commits](sphinx-doc/sphinx-autobuild@2024.04.16...2024.10.03)

---
updated-dependencies:
- dependency-name: netcdf4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: black
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python
- dependency-name: sphinx-autobuild
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
...

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@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Nov 1, 2024
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