PanyiDong · PanyiDong · Apr 9, 2022 · Apr 9, 2022 · Apr 9, 2022 · Apr 9, 2022
diff --git a/.codecov.yml b/.codecov.yml
@@ -0,0 +1,41 @@
+codecov:
+  notify:
+    require_ci_to_pass: yes
+
+coverage:
+  precision: 2 # 2 = xx.xx%, 0 = xx%
+  round: nearest # how coverage is rounded: down/up/nearest
+  range: 10...90 # custom range of coverage colors from red -> yellow -> green
+  status:
+    # https://codecov.readme.io/v1.0/docs/commit-status
+    project:
+      default:
+        against: auto
+        target: 70% # specify the target coverage for each commit status
+        threshold: 50% # allow this little decrease on project
+        # https://github.com/codecov/support/wiki/Filtering-Branches
+        # branches: master
+        if_ci_failed: error
+    # https://github.com/codecov/support/wiki/Patch-Status
+    patch:
+      default:
+        against: auto
+        target: 30% # specify the target "X%" coverage to hit
+        threshold: 50% # allow this much decrease on patch
+    changes: false
+
+parsers:
+  gcov:
+    branch_detection:
+      conditional: true
+      loop: true
+      macro: false
+      method: false
+  javascript:
+    enable_partials: false
+
+comment:
+  layout: header, diff
+  require_changes: false
+  behavior: default # update if exists else create new
+  branches: ["master"]
diff --git a/.github/workflows/codecov.yml b/.github/workflows/codecov.yml
@@ -0,0 +1,23 @@
+name: CodeCov
+on: [push, pull_request]
+jobs:
+  run:
+    runs-on: ubuntu-latest
+    env:
+      OS: ubuntu-latest
+      PYTHON: "3.9"
+    steps:
+      - uses: checkout@v2
+        with:
+          fetch-depth: ‘2’
+
+      - name: Setup Python
+        uses: actions/setup-python@master
+        with:
+          python-version: 3.7
+      - name: Generate Report
+        run: |
+          pip install coverage
+          coverage run -m unittest
+      - name: Upload Coverage to Codecov
+        uses: codecov/codecov-action@v2
diff --git a/.github/workflows/github-actions.yml b/.github/workflows/github-actions.yml
@@ -0,0 +1,17 @@
+name: GitHub Actions
+on: [push]
+jobs:
+  Explore-GitHub-Actions:
+    runs-on: ubuntu-latest
+    steps:
+      - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
+      - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
+      - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
+      - name: Check out repository code
+        uses: actions/checkout@v3
+      - run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner."
+      - run: echo "🖥️ The workflow is now ready to test your code on the runner."
+      - name: List files in the repository
+        run: |
+          ls ${{ github.workspace }}
+      - run: echo "🍏 This job's status is ${{ job.status }}."
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,8 @@
+venv/
+.vscode/
+__pycache__/
+*.py[cod]
+.DS_Store
+notes.md
+.coverage
+htmlcov/*
diff --git a/My_AutoML/__pycache__/__init__.cpython-39.pyc b/My_AutoML/__pycache__/__init__.cpython-39.pyc
diff --git a/My_AutoML/__pycache__/_base.cpython-39.pyc b/My_AutoML/__pycache__/_base.cpython-39.pyc
diff --git a/My_AutoML/_balancing/__pycache__/__init__.cpython-39.pyc b/My_AutoML/_balancing/__pycache__/__init__.cpython-39.pyc
diff --git a/My_AutoML/_balancing/__pycache__/_mixed_sampling.cpython-39.pyc b/My_AutoML/_balancing/__pycache__/_mixed_sampling.cpython-39.pyc
diff --git a/My_AutoML/_balancing/__pycache__/_over_sampling.cpython-39.pyc b/My_AutoML/_balancing/__pycache__/_over_sampling.cpython-39.pyc
diff --git a/My_AutoML/_balancing/__pycache__/_under_sampling.cpython-39.pyc b/My_AutoML/_balancing/__pycache__/_under_sampling.cpython-39.pyc
diff --git a/My_AutoML/_encoding/__pycache__/__init__.cpython-39.pyc b/My_AutoML/_encoding/__pycache__/__init__.cpython-39.pyc
diff --git a/My_AutoML/_encoding/__pycache__/_encoding.cpython-39.pyc b/My_AutoML/_encoding/__pycache__/_encoding.cpython-39.pyc
diff --git a/My_AutoML/_feature_selection/__pycache__/__init__.cpython-39.pyc b/My_AutoML/_feature_selection/__pycache__/__init__.cpython-39.pyc
diff --git a/My_AutoML/_feature_selection/__pycache__/_advance.cpython-39.pyc b/My_AutoML/_feature_selection/__pycache__/_advance.cpython-39.pyc
diff --git a/My_AutoML/_feature_selection/__pycache__/_base.cpython-39.pyc b/My_AutoML/_feature_selection/__pycache__/_base.cpython-39.pyc
diff --git a/My_AutoML/_feature_selection/__pycache__/_imported.cpython-39.pyc b/My_AutoML/_feature_selection/__pycache__/_imported.cpython-39.pyc
diff --git a/My_AutoML/_hpo/__pycache__/_DL.cpython-39.pyc b/My_AutoML/_hpo/__pycache__/_DL.cpython-39.pyc
diff --git a/My_AutoML/_hpo/__pycache__/_ML.cpython-39.pyc b/My_AutoML/_hpo/__pycache__/_ML.cpython-39.pyc
diff --git a/My_AutoML/_hpo/__pycache__/__init__.cpython-39.pyc b/My_AutoML/_hpo/__pycache__/__init__.cpython-39.pyc
diff --git a/My_AutoML/_hpo/__pycache__/_base.cpython-39.pyc b/My_AutoML/_hpo/__pycache__/_base.cpython-39.pyc
diff --git a/My_AutoML/_hyperparameters/__pycache__/__init__.cpython-39.pyc b/My_AutoML/_hyperparameters/__pycache__/__init__.cpython-39.pyc
diff --git a/My_AutoML/_hyperparameters/_ray/__pycache__/_balancing_hyperparameter.cpython-39.pyc b/My_AutoML/_hyperparameters/_ray/__pycache__/_balancing_hyperparameter.cpython-39.pyc
diff --git a/My_AutoML/_hyperparameters/_ray/__pycache__/_classifier_hyperparameter.cpython-39.pyc b/My_AutoML/_hyperparameters/_ray/__pycache__/_classifier_hyperparameter.cpython-39.pyc
diff --git a/My_AutoML/_hyperparameters/_ray/__pycache__/_encoder_hyperparameter.cpython-39.pyc b/My_AutoML/_hyperparameters/_ray/__pycache__/_encoder_hyperparameter.cpython-39.pyc
diff --git a/My_AutoML/_hyperparameters/_ray/__pycache__/_feature_selection_hyperparameter.cpython-39.pyc b/My_AutoML/_hyperparameters/_ray/__pycache__/_feature_selection_hyperparameter.cpython-39.pyc
diff --git a/My_AutoML/_hyperparameters/_ray/__pycache__/_imputer_hyperparameter.cpython-39.pyc b/My_AutoML/_hyperparameters/_ray/__pycache__/_imputer_hyperparameter.cpython-39.pyc
diff --git a/My_AutoML/_hyperparameters/_ray/__pycache__/_regressor_hyperparameter.cpython-39.pyc b/My_AutoML/_hyperparameters/_ray/__pycache__/_regressor_hyperparameter.cpython-39.pyc
diff --git a/My_AutoML/_hyperparameters/_ray/__pycache__/_scaling_hyperparameter.cpython-39.pyc b/My_AutoML/_hyperparameters/_ray/__pycache__/_scaling_hyperparameter.cpython-39.pyc
diff --git a/My_AutoML/_imputation/__pycache__/__init__.cpython-39.pyc b/My_AutoML/_imputation/__pycache__/__init__.cpython-39.pyc
diff --git a/My_AutoML/_imputation/__pycache__/_base.cpython-39.pyc b/My_AutoML/_imputation/__pycache__/_base.cpython-39.pyc
diff --git a/My_AutoML/_imputation/__pycache__/_clustering.cpython-39.pyc b/My_AutoML/_imputation/__pycache__/_clustering.cpython-39.pyc
diff --git a/My_AutoML/_imputation/__pycache__/_multiple.cpython-39.pyc b/My_AutoML/_imputation/__pycache__/_multiple.cpython-39.pyc
diff --git a/My_AutoML/_imputation/__pycache__/_nn.cpython-39.pyc b/My_AutoML/_imputation/__pycache__/_nn.cpython-39.pyc
diff --git a/My_AutoML/_model/__init__.py b/My_AutoML/_model/__init__.py
@@ -11,7 +11,7 @@
 Author: Panyi Dong (panyid2@illinois.edu)
 
 -----
-Last Modified: Friday, 8th April 2022 10:25:54 pm
+Last Modified: Saturday, 9th April 2022 11:44:01 am
 Modified By: Panyi Dong (panyid2@illinois.edu)
 
 -----
@@ -49,6 +49,9 @@
     LogisticRegression,
 )
 from sklearn.naive_bayes import ComplementNB
+
+# need to enable hist gradient boosting features first
+from sklearn.experimental import enable_hist_gradient_boosting
 from sklearn.ensemble import (
     HistGradientBoostingClassifier,
     HistGradientBoostingRegressor,

diff --git a/My_AutoML/_model/__pycache__/_FNN.cpython-39.pyc b/My_AutoML/_model/__pycache__/_FNN.cpython-39.pyc
diff --git a/My_AutoML/_model/__pycache__/_RNN.cpython-39.pyc b/My_AutoML/_model/__pycache__/_RNN.cpython-39.pyc
diff --git a/My_AutoML/_model/__pycache__/__init__.cpython-39.pyc b/My_AutoML/_model/__pycache__/__init__.cpython-39.pyc
diff --git a/My_AutoML/_scaling/__pycache__/__init__.cpython-39.pyc b/My_AutoML/_scaling/__pycache__/__init__.cpython-39.pyc
diff --git a/My_AutoML/_scaling/__pycache__/_scaling.cpython-39.pyc b/My_AutoML/_scaling/__pycache__/_scaling.cpython-39.pyc
diff --git a/My_AutoML/_utils/__pycache__/__init__.cpython-39.pyc b/My_AutoML/_utils/__pycache__/__init__.cpython-39.pyc
diff --git a/My_AutoML/_utils/__pycache__/_base.cpython-39.pyc b/My_AutoML/_utils/__pycache__/_base.cpython-39.pyc
diff --git a/My_AutoML/_utils/__pycache__/_data.cpython-39.pyc b/My_AutoML/_utils/__pycache__/_data.cpython-39.pyc
diff --git a/My_AutoML/_utils/__pycache__/_file.cpython-39.pyc b/My_AutoML/_utils/__pycache__/_file.cpython-39.pyc
diff --git a/My_AutoML/_utils/__pycache__/_optimize.cpython-39.pyc b/My_AutoML/_utils/__pycache__/_optimize.cpython-39.pyc
diff --git a/My_AutoML/_utils/__pycache__/_preprocessing.cpython-39.pyc b/My_AutoML/_utils/__pycache__/_preprocessing.cpython-39.pyc
diff --git a/My_AutoML/_utils/__pycache__/_stat.cpython-39.pyc b/My_AutoML/_utils/__pycache__/_stat.cpython-39.pyc
diff --git a/setup.py b/setup.py
@@ -11,7 +11,7 @@
 Author: Panyi Dong (panyid2@illinois.edu)
 
 -----
-Last Modified: Friday, 8th April 2022 10:12:11 am
+Last Modified: Saturday, 9th April 2022 11:41:20 am
 Modified By: Panyi Dong (panyid2@illinois.edu)
 
 -----
@@ -71,7 +71,7 @@ def get_ext_path(root_dir, exclude_files):
 
 setup(
     name="My_AutoML",
-    version="0.0.2",
+    version="0.2.0",
     packages=find_packages(),
     # ext_modules = cythonize(
     #     get_ext_path("My_AutoML", EXCLUDE_FILES),

diff --git a/tests/__pycache__/basic.cpython-39.pyc b/tests/__pycache__/basic.cpython-39.pyc
diff --git a/tests/basic.py b/tests/basic.py
@@ -0,0 +1,71 @@
+"""
+File: basic.py
+Author: Panyi Dong
+GitHub: https://github.com/PanyiDong/
+Mathematics Department, University of Illinois at Urbana-Champaign (UIUC)
+
+Project: My_AutoML
+Latest Version: 0.2.0
+Relative Path: /tests/basic.py
+File Created: Saturday, 9th April 2022 11:25:27 am
+Author: Panyi Dong (panyid2@illinois.edu)
+
+-----
+Last Modified: Saturday, 9th April 2022 11:51:42 am
+Modified By: Panyi Dong (panyid2@illinois.edu)
+
+-----
+MIT License
+
+Copyright (c) 2022 - 2022, Panyi Dong
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
+"""
+
+import unittest
+import numpy as np
+import pandas as pd
+
+from My_AutoML._utils import get_missing_matrix
+
+data = pd.DataFrame(
+    {
+        "col_1": [1, 2, np.nan, 4],
+        "col_2": [np.nan, 3, np.nan, 5],
+    }
+)
+
+expected_result = pd.DataFrame(
+    {
+        "col_1": [0, 0, 1, 0],
+        "col_2": [1, 0, 1, 0],
+    }
+)
+
+
+class TestGetMissingMatrix(unittest.TestCase):
+    def setUp(self):
+        self.die = get_missing_matrix
+
+    def test_upper(self):
+        self.assertEqual(
+            (self.die(data) == expected_result.values).all(),
+            True,
+            "Should be {}, get {}.".format(expected_result.values, self.die(data)),
+        )