Update to copernicusmarine v2.2.2

[j-atkins]

Updated copernicusmarine dependency to v2.2.2, which fixes the bug raised in #198.

virtualship fetch is now working again!

[j-atkins]

Tests are failing with:

================================= short test summary info =================================
ERROR tests/make_realistic/test_ctd_make_realistic.py - UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/...
!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!!!!!!!
==================================== 1 error in 1.72s =====================================

It's to do with depreciation in the seabird package, which is only used for testing the added noise in test_ctd_make_realistic.py. However, the added noise procedure is currently not implemented in VirtualShip.

Can we remove this test for the time being? And re-add it should we add the noise back in down the line? Commenting it out is a temporary option...

cc @ammedd

[ammedd]

Yes, please do comment out the seabird package for now. We'll add it later indeed. It requires a bit of thinking/discussing on our side.

[erikvansebille]

I would either add a TODO comment with reference to the GitHub Issue if we expect the package to be back online later; or completely remove (instead of comment out) seabird when we don't expect it to be useable anytime in the future

Suggested change

	# def test_ctd_make_realistic(tmpdir) -> None:
	# # add noise and convert to cnv
	# files = ctd_make_realistic("ctd.zarr", out_dir=tmpdir, prefix="CTD_")
	# TODO readable this test when seabird package works again (see #200)
	# def test_ctd_make_realistic(tmpdir) -> None:
	# # add noise and convert to cnv
	# files = ctd_make_realistic("ctd.zarr", out_dir=tmpdir, prefix="CTD_")

[j-atkins]

Good idea. Seabird doesn't not appear very active so I have removed it, and added a TODO for future reference.