Code

Some improvements#18

Code

Merged

ldenti merged 13 commits intomasterParsoa/SVDSS:masterfrom lowcovParsoa/SVDSS:lowcovCopy head branch name to clipboardJan 13, 2023

Commits

Commits on Oct 28, 2022

• Filters alignments using a fixed treshold

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  2a2a36d

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• Useless commit to clean(?) code

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  aafc5b9

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• Adds consensus CIGAR to variant INFO field

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  21ca02d

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• Adds verbose mode

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  f1db064

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• Fixes bug that made us miss a SFS per cluster

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  81bf58f

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• Uses ratio-based (on lenghts) clustering for clusters

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  117d949

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• Improves chains-filtering heuristic

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  9a91453

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• Replaces alignment matrix with nuc44

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  d93332e

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Commits on Jan 5, 2023

• Prints name and info of missmoothed reads

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  87aedf4

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Commits on Jan 6, 2023

• Fix bug with reallocation

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  7ba9678

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Commits on Jan 12, 2023

• Update citation

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  9e12431

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• Update dependencies

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  43ad7fb

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Commits on Jan 13, 2023

• Add smoothing treshold to cli

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  aee62f4

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