v2.0.0

SVDSS v2:

• haplotags (if present in the input BAM file) can be used to guide subclustering and SV calling
• bug fixes
• changes to CLI

v2.0.0-alpha.3

Third alpha release for SVDSS2:

• rename fasta/q CLI option to fastx
• CLI option to filter based on mapping quality
• CLI option to remove 0/0 calls
• CLI option to ignore haplotag information

v2.0.0-alpha.2

Second alpha release for SVDSS2:

• fixes a bug in pingpong (small batches were potentially skipped)

v2.0.0-alpha.1

First alpha release for SVDSS2

v1.0.5-fix

Bug fixing for v1.0.5:

• Multiple extended SFSs when too close
• Missing first base in insertion alleles
• Segmentation fault in clipped mode (#24)

This is the last patch for SVDSS v1. We will move to SVDSS2

v1.0.5

Patch over v1.0.4:

• bug fixing
• various heuristic improvements

Please check PR #18 for more info.

v1.0.4

Patch over v1.0.3:

• updates abpoa to v1.4.1 to solve "random" segfaults - see #12
• removes filtering of "unwanted" chromosomes (i.e. ALT contigs. User should take care of it) - see #10
• fixes search over a fastq
• improves cli

v1.0.3

Patch over v1.0.2:

• fixes portable compilation (removes -march=native)
• fixes a bug in assemble mode
• small help improvements

v1.0.2

Patch over v1.0.1:

• fixes compilation in conda environment

v1.0.1

Patch over v1.0.0:

• adds compilation via cmake
• adds holy-build compilation
• provides binary