Create Jenkinsfile

Jenkinsfile

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+pipeline {
+    agent any
+
+    stages {
+        stage('Checkout Code') {
+            steps {
+                    // Checkout the repository
+                checkout scm
+            }
+        }
+
+        stage('Run Pipeline') {
+            steps {
+                    // Run the Nextflow pipeline
+                sh 'nextflow run main.nf -profile conda -params-file params.mm.json'
+
+            }
+        }
+    }
+
+    post {
+        success {
+            echo "Pipeline ran successfully!"
+        }
+
+        failure {
+            echo "Pipeline failed!"
+        }
+    }
+}