chore(release): 2.12.0

## [2.12.0](v2.11.0...v2.12.0) (2024-4-23)

### Features

* **pharmcat:** support more than one outside call file ([154ac49](154ac49))
* **pipeline:** add the feature of bypassing the gVCF check to the pipeline ([d38005e](d38005e))

### Bug Fixes

* add json2tsv script ([dfabdc1](dfabdc1))
* **namedallelematcher:** improve VCF warnings ([1659e21](1659e21))
* **pharmcat:** add to path in docker container to fix running scripts ([57a956b](57a956b))
* **phenotyper:** strip gene symbol prefix from outside call diplotype alleles ([940f6cf](940f6cf))
* **reporter:** add "Activity Value" prefix to formatted function ([8735554](8735554))
* **reporter:** avoid exception for multiple phenotypes or activity scores for warfarin ([da65834](da65834)), closes [#180](#180)
* **reporter:** fix display of function/activity in variant position section ([2181f31](2181f31))
* **reporter:** no tags for CPIC warfarin report ([3842c1f](3842c1f))

CHANGELOG.md

@@ -1,3 +1,23 @@
+## [2.12.0](https://github.com/PharmGKB/PharmCAT/compare/v2.11.0...v2.12.0) (2024-4-23)
+
+
+### Features
+
+* **pharmcat:** support more than one outside call file ([154ac49](https://github.com/PharmGKB/PharmCAT/commit/154ac494c49ff178b77c6e27ac1dd4042fb878d2))
+* **pipeline:** add the feature of bypassing the gVCF check to the pipeline ([d38005e](https://github.com/PharmGKB/PharmCAT/commit/d38005e7cfe42a8e403af701ae078fb255779ce0))
+
+
+### Bug Fixes
+
+* add json2tsv script ([dfabdc1](https://github.com/PharmGKB/PharmCAT/commit/dfabdc1988a852f6e38cdbd91e83df35c653e864))
+* **namedallelematcher:** improve VCF warnings ([1659e21](https://github.com/PharmGKB/PharmCAT/commit/1659e21baa578af0dcd56989f40021d4df19af21))
+* **pharmcat:** add to path in docker container to fix running scripts ([57a956b](https://github.com/PharmGKB/PharmCAT/commit/57a956b79432c7a7a1ffa3d21177009e607ec24a))
+* **phenotyper:** strip gene symbol prefix from outside call diplotype alleles ([940f6cf](https://github.com/PharmGKB/PharmCAT/commit/940f6cf8f5c96731d9a51c66393e40ce0ac96936))
+* **reporter:** add "Activity Value" prefix to formatted function ([8735554](https://github.com/PharmGKB/PharmCAT/commit/8735554840622bb560cf4edc7c3461cc2ddbe6ff))
+* **reporter:** avoid exception for multiple phenotypes or activity scores for warfarin ([da65834](https://github.com/PharmGKB/PharmCAT/commit/da65834cdddba220739269de6a930c7ad2f9ba15)), closes [#180](https://github.com/PharmGKB/PharmCAT/issues/180)
+* **reporter:** fix display of function/activity in variant position section ([2181f31](https://github.com/PharmGKB/PharmCAT/commit/2181f31cb8dd4252302962fd02520c91f5305b43))
+* **reporter:** no tags for CPIC warfarin report ([3842c1f](https://github.com/PharmGKB/PharmCAT/commit/3842c1fcf2dcad71ea5d6252e12601f15510b1bb))
+
 ## [2.11.0](https://github.com/PharmGKB/PharmCAT/compare/v2.10.0...v2.11.0) (2024-3-26)
 
 

docs/index.md

@@ -3,7 +3,7 @@ title: Home
 permalink: /
 nav_order: 1
 # version is dynamically updated - DO NOT MODIFY MANUALLY
-pharmcat_version: 2.11.0
+pharmcat_version: 2.12.0
 ---
 
 # PharmCAT:<br />Pharmacogenomics Clinical Annotation Tool

package.json

@@ -1,6 +1,6 @@
 {
   "name": "pharmcat",
-  "version": "2.11.0",
+  "version": "2.12.0",
   "repository": {
     "type": "git",
     "url": "https://github.com/PharmGKB/PharmCAT.git"

preprocessor/preprocessor/common.py

@@ -2,7 +2,7 @@
 
 
 # version is dynamically updated - DO NOT MODIFY MANUALLY
-PHARMCAT_VERSION = '2.11.0'
+PHARMCAT_VERSION = '2.12.0'
 
 # expected tool versions
 MIN_BCFTOOLS_VERSION = '1.18'