PMID null in Pharmcat json report #187
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This will be fixed in the next release (which should be very soon). |
markwoon
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Jul 19, 2024
## [2.14.0](v2.13.0...v2.14.0) (2024-07-19) ### Features * **data:** make all allele definitions import from PharmGKB ([47da939](47da939)) * **data:** update to PharmVar v6.1.3 ([e4b8fc2](e4b8fc2)) ### Bug Fixes * **data:** fix downloading new guidance data ([a1007c0](a1007c0)) * **diplotype-comparator:** update string delimiter ([e10a2ea](e10a2ea)) * **namedallelematcher:** fix exception thrown while sorting diplotype matches ([093f5b2](093f5b2)) * **namedallelematcher:** handle CYP2D6 and HLA outside calls with sub-alleles gracefully ([dcaa055](dcaa055)) * **reporter:** fix how allele presence phenotypes are shown in final report ([2f00c6c](2f00c6c)) * **reporter:** fix missing PMID in report citation data ([81a0df2](81a0df2)), closes [#187](#187) * **reporter:** fix multiple version check logic ([3af2726](3af2726)) * **reporter:** fix phenotype check by querying only phenotype-related genes in an annotation ([b666953](b666953)), closes [#180](#180) * **reporter:** warn if multiple versions found ([9bb2a55](9bb2a55))
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Do you want to request a feature or report a bug?
Bug report
What is the current behavior?
pmid value is 'null' for all entries in pharmcat json report (Pharmcat Version 2.13.0)
What is the expected behavior?
pmid value should be the pubmed id for a certain citation. This used to work in previous pharmcat versions (last version tested was 2.8.3, it worked in that version)
What is the motivation / use case for changing the behavior?
pmid is needed for report
Please tell us about your environment:
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