Update the copyright to 2020 where needed.

Poshi · Aug 4, 2020 · f098e4d · f098e4d
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diff --git a/Makefile b/Makefile
@@ -1,6 +1,6 @@
 # Makefile for htslib, a C library for high-throughput sequencing data formats.
 #
-#    Copyright (C) 2013-2019 Genome Research Ltd.
+#    Copyright (C) 2013-2020 Genome Research Ltd.
 #
 #    Author: John Marshall <jm18@sanger.ac.uk>
 #

diff --git a/bgzf.c b/bgzf.c
@@ -2,7 +2,7 @@
 
    Copyright (c) 2008 Broad Institute / Massachusetts Institute of Technology
                  2011, 2012 Attractive Chaos <attractor@live.co.uk>
-   Copyright (C) 2009, 2013-2019 Genome Research Ltd
+   Copyright (C) 2009, 2013-2020 Genome Research Ltd
 
    Permission is hereby granted, free of charge, to any person obtaining a copy
    of this software and associated documentation files (the "Software"), to deal

diff --git a/configure.ac b/configure.ac
@@ -1,6 +1,6 @@
 # Configure script for htslib, a C library for high-throughput sequencing data.
 #
-#    Copyright (C) 2015-2018 Genome Research Ltd.
+#    Copyright (C) 2015-2019 Genome Research Ltd.
 #
 #    Author: John Marshall <jm18@sanger.ac.uk>
 #

diff --git a/cram/cram_codecs.c b/cram/cram_codecs.c
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2012-2019 Genome Research Ltd.
+Copyright (c) 2012-2020 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without

diff --git a/cram/cram_decode.c b/cram/cram_decode.c
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2012-2019 Genome Research Ltd.
+Copyright (c) 2012-2020 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without

diff --git a/cram/cram_encode.c b/cram/cram_encode.c
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2012-2019 Genome Research Ltd.
+Copyright (c) 2012-2020 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without

diff --git a/cram/cram_index.c b/cram/cram_index.c
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2013-2019 Genome Research Ltd.
+Copyright (c) 2013-2020 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without

diff --git a/cram/cram_io.c b/cram/cram_io.c
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2012-2019 Genome Research Ltd.
+Copyright (c) 2012-2020 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without

diff --git a/cram/cram_io.h b/cram/cram_io.h
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2012-2019 Genome Research Ltd.
+Copyright (c) 2012-2020 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without

diff --git a/cram/cram_stats.c b/cram/cram_stats.c
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2012-2014, 2016, 2018 Genome Research Ltd.
+Copyright (c) 2012-2014, 2016, 2018, 2020 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without

diff --git a/cram/cram_structs.h b/cram/cram_structs.h
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2012-2016, 2018-2019 Genome Research Ltd.
+Copyright (c) 2012-2016, 2018-2020 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without

diff --git a/cram/open_trace_file.c b/cram/open_trace_file.c
@@ -32,7 +32,7 @@ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 */
 
 /*
-Copyright (c) 2008, 2009, 2013, 2014-2015, 2018-2019 Genome Research Ltd.
+Copyright (c) 2008, 2009, 2013, 2014-2015, 2018-2020 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without

diff --git a/faidx.c b/faidx.c
@@ -1,6 +1,6 @@
 /*  faidx.c -- FASTA and FASTQ random access.
 
-    Copyright (C) 2008, 2009, 2013-2019 Genome Research Ltd.
+    Copyright (C) 2008, 2009, 2013-2020 Genome Research Ltd.
     Portions copyright (C) 2011 Broad Institute.
 
     Author: Heng Li <lh3@sanger.ac.uk>

diff --git a/header.c b/header.c
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2018-2019 Genome Research Ltd.
+Copyright (c) 2018-2020 Genome Research Ltd.
 Authors: James Bonfield <jkb@sanger.ac.uk>, Valeriu Ohan <vo2@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without

diff --git a/hfile_libcurl.c b/hfile_libcurl.c
@@ -1,6 +1,6 @@
 /*  hfile_libcurl.c -- libcurl backend for low-level file streams.
 
-    Copyright (C) 2015-2017, 2019 Genome Research Ltd.
+    Copyright (C) 2015-2017, 2019-2020 Genome Research Ltd.
 
     Author: John Marshall <jm18@sanger.ac.uk>
 

diff --git a/hfile_s3.c b/hfile_s3.c
@@ -1,6 +1,6 @@
 /*  hfile_s3.c -- Amazon S3 backend for low-level file streams.
 
-    Copyright (C) 2015-2017, 2019 Genome Research Ltd.
+    Copyright (C) 2015-2017, 2019-2020 Genome Research Ltd.
 
     Author: John Marshall <jm18@sanger.ac.uk>
 

diff --git a/hts_internal.h b/hts_internal.h
@@ -1,6 +1,6 @@
 /*  hts_internal.h -- internal functions; not part of the public API.
 
-    Copyright (C) 2015-2016, 2018-2019 Genome Research Ltd.
+    Copyright (C) 2015-2016, 2018-2020 Genome Research Ltd.
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

diff --git a/hts_os.c b/hts_os.c
@@ -1,7 +1,7 @@
 /// @file hts_os.c
 /// Operating System specific tweaks, for compatibility with POSIX.
 /*
-   Copyright (C) 2017 Genome Research Ltd.
+   Copyright (C) 2017, 2019 Genome Research Ltd.
 
     Author: James Bonfield <jkb@sanger.ac.uk>
 

diff --git a/htslib/faidx.h b/htslib/faidx.h
@@ -1,7 +1,7 @@
 /// @file htslib/faidx.h
 /// FASTA random access.
 /*
-   Copyright (C) 2008, 2009, 2013, 2014, 2016, 2017-2019 Genome Research Ltd.
+   Copyright (C) 2008, 2009, 2013, 2014, 2016, 2017-2020 Genome Research Ltd.
 
    Author: Heng Li <lh3@sanger.ac.uk>
 

diff --git a/htslib/hts.h b/htslib/hts.h
@@ -1,7 +1,7 @@
 /// @file htslib/hts.h
 /// Format-neutral I/O, indexing, and iterator API functions.
 /*
-    Copyright (C) 2012-2019 Genome Research Ltd.
+    Copyright (C) 2012-2020 Genome Research Ltd.
     Copyright (C) 2010, 2012 Broad Institute.
     Portions copyright (C) 2003-2006, 2008-2010 by Heng Li <lh3@live.co.uk>
 

diff --git a/htslib/hts_defs.h b/htslib/hts_defs.h
@@ -1,6 +1,6 @@
 /*  hts_defs.h -- Miscellaneous definitions.
 
-    Copyright (C) 2013-2015,2017, 2019 Genome Research Ltd.
+    Copyright (C) 2013-2015,2017, 2019-2020 Genome Research Ltd.
 
     Author: John Marshall <jm18@sanger.ac.uk>
 

diff --git a/htslib/kseq.h b/htslib/kseq.h
@@ -1,7 +1,7 @@
 /* The MIT License
 
    Copyright (c) 2008, 2009, 2011 Attractive Chaos <attractor@live.co.uk>
-   Copyright (C) 2013, 2018 Genome Research Ltd.
+   Copyright (C) 2013, 2018, 2020 Genome Research Ltd.
 
    Permission is hereby granted, free of charge, to any person obtaining
    a copy of this software and associated documentation files (the

diff --git a/htslib/kstring.h b/htslib/kstring.h
@@ -1,7 +1,7 @@
 /* The MIT License
 
    Copyright (C) 2011 by Attractive Chaos <attractor@live.co.uk>
-   Copyright (C) 2013-2014, 2016, 2018-2019 Genome Research Ltd.
+   Copyright (C) 2013-2014, 2016, 2018-2020 Genome Research Ltd.
 
    Permission is hereby granted, free of charge, to any person obtaining
    a copy of this software and associated documentation files (the

diff --git a/htslib/vcf.h b/htslib/vcf.h
@@ -2,7 +2,7 @@
 /// High-level VCF/BCF variant calling file operations.
 /*
     Copyright (C) 2012, 2013 Broad Institute.
-    Copyright (C) 2012-2019 Genome Research Ltd.
+    Copyright (C) 2012-2020 Genome Research Ltd.
 
     Author: Heng Li <lh3@sanger.ac.uk>
 

diff --git a/htslib/vcf_sweep.h b/htslib/vcf_sweep.h
@@ -1,7 +1,7 @@
 /// @file htslib/vcf_sweep.h
 /// Forward/reverse sweep API.
 /*
-    Copyright (C) 2013-2015 Genome Research Ltd.
+    Copyright (C) 2013-2015, 2019 Genome Research Ltd.
 
     Author: Petr Danecek <pd3@sanger.ac.uk>
 

diff --git a/kstring.c b/kstring.c
@@ -1,7 +1,7 @@
 /* The MIT License
 
    Copyright (C) 2011 by Attractive Chaos <attractor@live.co.uk>
-   Copyright (C) 2013-2018 Genome Research Ltd.
+   Copyright (C) 2013-2018, 2020 Genome Research Ltd.
 
    Permission is hereby granted, free of charge, to any person obtaining
    a copy of this software and associated documentation files (the

diff --git a/plugin.c b/plugin.c
@@ -1,6 +1,6 @@
 /*  plugin.c -- low-level path parsing and plugin functions.
 
-    Copyright (C) 2015-2016 Genome Research Ltd.
+    Copyright (C) 2015-2016, 2020 Genome Research Ltd.
 
     Author: John Marshall <jm18@sanger.ac.uk>
 

diff --git a/sam_internal.h b/sam_internal.h
@@ -1,6 +1,6 @@
 /*  sam_internal.h -- internal functions; not part of the public API.
 
-    Copyright (C) 2019 Genome Research Ltd.
+    Copyright (C) 2019-2020 Genome Research Ltd.
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

diff --git a/tabix.1 b/tabix.1
@@ -4,7 +4,7 @@
 tabix \- Generic indexer for TAB-delimited genome position files
 .\"
 .\" Copyright (C) 2009-2011 Broad Institute.
-.\" Copyright (C) 2014, 2016, 2018 Genome Research Ltd.
+.\" Copyright (C) 2014, 2016, 2018, 2020 Genome Research Ltd.
 .\"
 .\" Author: Heng Li <lh3@sanger.ac.uk>
 .\"

diff --git a/tbx.c b/tbx.c
@@ -1,6 +1,6 @@
 /*  tbx.c -- tabix API functions.
 
-    Copyright (C) 2009, 2010, 2012-2015, 2017-2019 Genome Research Ltd.
+    Copyright (C) 2009, 2010, 2012-2015, 2017-2020 Genome Research Ltd.
     Copyright (C) 2010-2012 Broad Institute.
 
     Author: Heng Li <lh3@sanger.ac.uk>

diff --git a/test/test-bcf-sr.c b/test/test-bcf-sr.c
@@ -1,5 +1,5 @@
 /*
-    Copyright (C) 2017 Genome Research Ltd.
+    Copyright (C) 2017, 2020 Genome Research Ltd.
 
     Author: Petr Danecek <pd3@sanger.ac.uk>
 

diff --git a/test/test-bcf-sr.pl b/test/test-bcf-sr.pl
@@ -1,7 +1,7 @@
 #!/usr/bin/env perl
 # test-bcf-sr.pl -- Test bcf synced reader's allele pairing
 #
-#     Copyright (C) 2017-2018 Genome Research Ltd.
+#     Copyright (C) 2017-2018, 2020 Genome Research Ltd.
 #
 #     Author: petr.danecek@sanger
 #

diff --git a/test/test-regidx.c b/test/test-regidx.c
@@ -2,7 +2,7 @@
 
     gcc -g -Wall -O0 -I. -I../htslib/ -L../htslib regidx.c -o test-regidx test-regidx.c -lhts
 
-    Copyright (C) 2014,2016,2018 Genome Research Ltd.
+    Copyright (C) 2014,2016,2018, 2020 Genome Research Ltd.
 
     Author: Petr Danecek <pd3@sanger.ac.uk>
 

diff --git a/test/test-vcf-api.c b/test/test-vcf-api.c
@@ -1,6 +1,6 @@
 /*  test/test-vcf-api.c -- VCF test harness.
 
-    Copyright (C) 2013, 2014, 2017-2019 Genome Research Ltd.
+    Copyright (C) 2013, 2014, 2017-2020 Genome Research Ltd.
 
     Author: Petr Danecek <pd3@sanger.ac.uk>
 

diff --git a/test/test_kstring.c b/test/test_kstring.c
@@ -1,6 +1,6 @@
 /*  test_kstring.c -- kstring unit tests
 
-    Copyright (C) 2018 Genome Research Ltd.
+    Copyright (C) 2018, 2020 Genome Research Ltd.
 
     Author: Rob Davies <rmd@sanger.ac.uk>
 

diff --git a/test/test_str2int.c b/test/test_str2int.c
@@ -1,6 +1,6 @@
 /* test/test_str2int.c -- Test integer string conversion (and safe printing)
 
-   Copyright (C) 2019 Genome Research Ltd.
+   Copyright (C) 2019-2020 Genome Research Ltd.
 
    Author: Rob Davies <rmd@sanger.ac.uk>
 

diff --git a/textutils.c b/textutils.c
@@ -1,6 +1,6 @@
 /*  textutils.c -- non-bioinformatics utility routines for text etc.
 
-    Copyright (C) 2016, 2018-2019 Genome Research Ltd.
+    Copyright (C) 2016, 2018-2020 Genome Research Ltd.
 
     Author: John Marshall <jm18@sanger.ac.uk>
 

diff --git a/vcfutils.c b/vcfutils.c
@@ -1,6 +1,6 @@
 /*  vcfutils.c -- allele-related utility functions.
 
-    Copyright (C) 2012-2018 Genome Research Ltd.
+    Copyright (C) 2012-2018, 2020 Genome Research Ltd.
 
     Author: Petr Danecek <pd3@sanger.ac.uk>