Delete DataRepo/data/tests/small_obob/small_obob_maven_6eaas_inf_lact… #3244
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| --- | |
| name: TraceBase Tests | |
| "on": [push, workflow_dispatch] | |
| # Set permissions for GITHUB_TOKEN | |
| # https://docs.github.com/en/actions/using-jobs/assigning-permissions-to-jobs | |
| permissions: read-all | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| services: | |
| postgres: | |
| image: postgres:13.4 | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: tracebase | |
| ports: | |
| - 5432:5432 | |
| # needed because the postgres container does not provide a healthcheck | |
| options: >- | |
| --health-cmd pg_isready --health-interval 10s | |
| --health-timeout 5s --health-retries 5 | |
| env: | |
| DATABASE_NAME: tracebase | |
| DATABASE_USER: postgres | |
| DATABASE_PASSWORD: postgres | |
| DATABASE_HOST: 127.0.0.1 | |
| DATABASE_PORT: 5432 | |
| DEBUG: true | |
| CACHES: TEST_CACHES | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.9 | |
| - name: psycopg2 prerequisites | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install python3-dev libpq-dev | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| pip install -r requirements.txt | |
| - name: Check makemigrations are complete | |
| run: python manage.py makemigrations --check --dry-run | |
| - name: Run migrations | |
| run: python manage.py migrate | |
| - name: Make the cache table | |
| run: python manage.py createcachetable | |
| - name: Run tests | |
| run: python manage.py test | |
| - name: Load lcmethod fixtures | |
| run: | | |
| python manage.py loaddata \ | |
| "DataRepo/fixtures/lc_methods.yaml" | |
| - name: Load initial tissue records | |
| run: | | |
| python manage.py legacy_load_study \ | |
| "DataRepo/data/tests/tissues/loading.yaml" | |
| - name: Load example compounds | |
| run: | | |
| python manage.py load_compounds \ | |
| --infile \ | |
| "DataRepo/data/tests/compounds/consolidated_tracebase_compound_list.tsv" | |
| - name: Load example sample table | |
| run: | | |
| python manage.py legacy_load_samples \ | |
| "DataRepo/data/tests/small_obob2/obob_animal_sample_table.tsv" |