• recurrenttransfermechanism.py #6252
Workflow file for this run
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| name: PsyNeuLink Docs CI | |
| on: | |
| push: | |
| branches-ignore: | |
| - 'dependabot/**' | |
| tags: | |
| - 'v*' | |
| pull_request: | |
| # run only the latest instance of this workflow job for the current branch/PR | |
| # cancel older runs | |
| # fall back to run id if not available (run id is unique -> no cancellations) | |
| concurrency: | |
| group: ci-${{ github.ref || github.run_id }}-${{ github.workflow }} | |
| cancel-in-progress: true | |
| jobs: | |
| docs-build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.7', '3.8', '3.9', '3.10', '3.11', '3.12'] | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| pnl-version: ${{ (github.event_name == 'push') && fromJSON('["head"]') || fromJSON('["head", "base"]') }} | |
| exclude: | |
| - os: macos-latest | |
| pnl-version: 'base' | |
| - os: windows-latest | |
| pnl-version: 'base' | |
| - python-version: '3.7' | |
| pnl-version: 'base' | |
| - python-version: '3.8' | |
| pnl-version: 'base' | |
| - python-version: '3.9' | |
| pnl-version: 'base' | |
| - python-version: '3.10' | |
| pnl-version: 'base' | |
| - python-version: '3.12' | |
| pnl-version: 'base' | |
| # Python 3.7 x64 on macos-14 (arm64) images is broken [0] | |
| # and arm64 version is not available [1]. | |
| # Restrict python 3.7 macos runs to macos-13 | |
| # [0] https://github.com/actions/setup-python/issues/855 | |
| # [1] https://github.com/actions/setup-python/issues/856 | |
| - python-version: '3.7' | |
| os: macos-latest | |
| outputs: | |
| on_master: ${{ steps.on_master.outputs.on-branch }} | |
| steps: | |
| # Increased fetch-depth and tag checkout needed compared to pnl-ci.yml | |
| - name: Checkout sources | |
| uses: actions/checkout@v4 | |
| if: ${{ matrix.pnl-version == 'head' }} | |
| with: | |
| fetch-depth: 200 | |
| ref: ${{ github.ref }} | |
| - name: Checkout pull base | |
| uses: actions/checkout@v4 | |
| if: ${{ matrix.pnl-version == 'base' }} | |
| with: | |
| fetch-depth: 200 | |
| ref: ${{ github.base_ref }} | |
| - name: Checkout tags | |
| run: git fetch --tags origin master | |
| - name: Check if on master | |
| if: ${{ github.event_name == 'push' }} | |
| id: on_master | |
| uses: ./.github/actions/on-branch | |
| with: | |
| branch: master | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| # Block python3.7.17 on macos. see: | |
| # https://github.com/actions/setup-python/issues/682 | |
| python-version: ${{ (matrix.os == 'macos-latest' && matrix.python-version == '3.7') && '3.7.16' || matrix.python-version }} | |
| - name: Get pip cache location | |
| shell: bash | |
| id: pip_cache | |
| run: | | |
| python -m pip install -U pip | |
| python -m pip --version | |
| echo "pip_cache_dir=$(python -m pip cache dir)" | tee -a $GITHUB_OUTPUT | |
| - name: Wheels cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ steps.pip_cache.outputs.pip_cache_dir }}/wheels | |
| key: ${{ runner.os }}-python-${{ matrix.python-version }}-pip-wheels-${{ hashFiles('requirements.txt', 'doc_requirements.txt') }}-${{ github.sha }} | |
| restore-keys: ${{ runner.os }}-python-${{ matrix.python-version }}-pip-wheels-${{ hashFiles('requirements.txt', 'doc_requirements.txt') }} | |
| # We need to install all PNL deps since docs config imports psyneulink module | |
| - name: Install PNL package | |
| uses: ./.github/actions/install-pnl | |
| with: | |
| features: 'doc' | |
| - name: Add git tag | |
| # The generated docs include PNL version, | |
| # set it to a fixed value to prevent polluting the diff | |
| # This needs to be done after installing PNL | |
| # to not interfere with dependency resolution | |
| id: add_zero_tag | |
| if: github.event_name == 'pull_request' | |
| run: git tag --force 'v0.0.0.0' | |
| - name: Build Documentation | |
| run: make -C docs/ html -e SPHINXOPTS="-aE -j auto" | |
| - name: Remove git tag | |
| # The generated docs include PNL version, | |
| # A special tag was set to a fixed value | |
| # to prevent polluting the diff | |
| if: steps.add_zero_tag.outcome != 'skipped' | |
| run: git tag -d 'v0.0.0.0' | |
| - name: Upload Documentation | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Documentation-${{matrix.pnl-version}}-${{ matrix.os }}-${{ matrix.python-version }} | |
| retention-days: 1 | |
| path: docs/build/html | |
| - name: Store PR number | |
| # The 'base' variant runs only on pull requests and has only one job | |
| if: ${{ matrix.pnl-version == 'base' }} | |
| run: echo ${{ github.event.pull_request.number }} > ./pr_number.txt | |
| - name: Upload PR number for other workflows | |
| # The 'base' variant runs only on pull requests and has only one job | |
| if: ${{ matrix.pnl-version == 'base' }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pr_number | |
| path: ./pr_number.txt | |
| docs-deploy: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.11] | |
| os: [ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| permissions: | |
| contents: write | |
| needs: [docs-build] | |
| environment: github-pages | |
| if: github.event_name == 'push' && | |
| (github.ref == 'refs/heads/master' || | |
| github.ref == 'refs/heads/devel' || | |
| github.ref == 'refs/heads/docs' || | |
| (startsWith(github.ref, 'refs/tags/') && contains(needs.*.outputs.on_master, 'master')) | |
| ) | |
| steps: | |
| - name: Checkout docs | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: gh-pages | |
| - name: Download branch docs | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: Documentation-head-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: _built_docs/${{ github.ref }} | |
| if: github.ref == 'refs/heads/master' || github.ref == 'refs/heads/devel' || github.ref == 'refs/heads/docs' | |
| - name: Update branch docs | |
| shell: bash | |
| run: | | |
| mkdir -p branch | |
| rm -rf "branch/${GITHUB_REF##*/}" | |
| # Remove '.doctrees' and move to correct location | |
| rm -rf "_built_docs/${GITHUB_REF}/.doctrees" | |
| mv -f "_built_docs/${GITHUB_REF}" branch/ | |
| if: github.ref == 'refs/heads/master' || github.ref == 'refs/heads/devel' || github.ref == 'refs/heads/docs' | |
| - name: Download main docs | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: Documentation-head-${{ matrix.os }}-${{ matrix.python-version }} | |
| # This overwrites files in current directory | |
| if: startsWith(github.ref, 'refs/tags/') && contains(needs.*.outputs.on_master, 'master') | |
| - name: Update main docs | |
| shell: bash | |
| run: | | |
| # Remove '.doctrees' | |
| rm -rf ".doctrees" | |
| if: startsWith(github.ref, 'refs/tags/') && contains(needs.*.outputs.on_master, 'master') | |
| - name: Commit docs changes | |
| shell: bash | |
| run: | | |
| # Commit changes to git | |
| git add . | |
| git config user.name "Documentation Bot" | |
| git config user.email "doc-bot@psyneulink.princeton.edu" | |
| git commit -m "Docs changes for $GITHUB_REF $GITHUB_SHA" | |
| git push |