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Description
Describe the bug
from nightly build, probably a torch 1.5 only issue:
======================================================================
ERROR: test_requires_meta_dict (tests.test_testtimeaugmentation.TestTestTimeAugmentation)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/jenkins/agent/workspace/Monai-pytorch-versions/monai/data/utils.py", line 271, in list_data_collate
ret[k] = default_collate([d[k] for d in data])
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/_utils/collate.py", line 79, in default_collate
return [default_collate(samples) for samples in transposed]
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/_utils/collate.py", line 79, in <listcomp>
return [default_collate(samples) for samples in transposed]
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/_utils/collate.py", line 74, in default_collate
return {key: default_collate([d[key] for d in batch]) for key in elem}
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/_utils/collate.py", line 74, in <dictcomp>
return {key: default_collate([d[key] for d in batch]) for key in elem}
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/_utils/collate.py", line 74, in default_collate
return {key: default_collate([d[key] for d in batch]) for key in elem}
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/_utils/collate.py", line 74, in <dictcomp>
return {key: default_collate([d[key] for d in batch]) for key in elem}
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/_utils/collate.py", line 64, in default_collate
return default_collate([torch.as_tensor(b) for b in batch])
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/_utils/collate.py", line 55, in default_collate
return torch.stack(batch, 0, out=out)
RuntimeError: Expected object of scalar type double but got scalar type float for sequence element 1.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/jenkins/agent/workspace/Monai-pytorch-versions/tests/test_testtimeaugmentation.py", line 155, in test_requires_meta_dict
tta(self.get_data(1, (20, 20), include_label=False))
File "/home/jenkins/agent/workspace/Monai-pytorch-versions/monai/data/test_time_augmentation.py", line 173, in __call__
for batch_data in tqdm(dl) if has_tqdm and self.progress else dl:
File "/opt/conda/lib/python3.6/site-packages/tqdm/std.py", line 1180, in __iter__
for obj in iterable:
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/dataloader.py", line 345, in __next__
data = self._next_data()
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/dataloader.py", line 385, in _next_data
data = self._dataset_fetcher.fetch(index) # may raise StopIteration
File "/opt/conda/lib/python3.6/site-packages/torch/utils/data/_utils/fetch.py", line 47, in fetch
return self.collate_fn(data)
File "/home/jenkins/agent/workspace/Monai-pytorch-versions/monai/data/utils.py", line 446, in pad_list_data_collate
return PadListDataCollate(method=method, mode=mode, **np_kwargs)(batch)
File "/home/jenkins/agent/workspace/Monai-pytorch-versions/monai/transforms/croppad/batch.py", line 119, in __call__
return list_data_collate(batch)
File "/home/jenkins/agent/workspace/Monai-pytorch-versions/monai/data/utils.py", line 284, in list_data_collate
raise RuntimeError(re_str) from re
RuntimeError: Expected object of scalar type double but got scalar type float for sequence element 1.
----------------------------------------------------------------------
================================
Printing MONAI config...
================================
MONAI version: 0.7.0+71.g7da61305
Numpy version: 1.18.1
Pytorch version: 1.5.1
MONAI flags: HAS_EXT = True, USE_COMPILED = True
MONAI rev id: 7da613056fec29ee764857a417d4cca61f07986b
Optional dependencies:
Pytorch Ignite version: 0.4.6
Nibabel version: 3.2.1
scikit-image version: 0.15.0
Pillow version: 8.4.0
Tensorboard version: 2.1.0
gdown version: 4.2.0
TorchVision version: 0.6.1
tqdm version: 4.62.3
lmdb version: 0.98
psutil version: 5.6.7
pandas version: 0.24.2
einops version: 0.3.2
transformers version: 4.11.3
mlflow version: 1.20.2
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