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ResampleToMatch shouldn't always require FILENAME_OR_OBJ #5902

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wyli opened this issue Jan 26, 2023 · 0 comments · Fixed by #5980
Closed

ResampleToMatch shouldn't always require FILENAME_OR_OBJ #5902

wyli opened this issue Jan 26, 2023 · 0 comments · Fixed by #5980

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@wyli
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wyli commented Jan 26, 2023

Describe the bug

original_fname = img.meta[Key.FILENAME_OR_OBJ]

this metadata update was too restrictive:

File ~/Software/anaconda3/envs/monai/lib/python3.9/site-packages/monai/transforms/spatial/array.py:419, in ResampleToMatch.__call__(self, img, img_dst, src_meta, dst_meta, mode, padding_mode, align_corners, dtype)
    409 dst_affine = img_dst.affine if isinstance(img_dst, MetaTensor) else torch.eye(4)
    410 img = super().__call__(
    411     img=img,
    412     dst_affine=dst_affine,
   (...)
    417     dtype=dtype,
    418 )
--> 419 self.update_meta(img, dst_affine=dst_affine, img_dst=img_dst)
    420 return img

File ~/Software/anaconda3/envs/monai/lib/python3.9/site-packages/monai/transforms/spatial/array.py:349, in ResampleToMatch.update_meta(self, img, dst_affine, img_dst)
    347     super().update_meta(img, dst_affine)
    348 if isinstance(img_dst, MetaTensor) and isinstance(img, MetaTensor):
--> 349     original_fname = img.meta[Key.FILENAME_OR_OBJ]
    350     img.meta = deepcopy(img_dst.meta)
    351     img.meta[Key.FILENAME_OR_OBJ] = original_fname

KeyError: 'filename_or_obj'

maybe it can be skipped with:

- original_fname = img.meta[Key.FILENAME_OR_OBJ]
+ original_fname = img.meta.get(Key.FILENAME_OR_OBJ)
@wyli wyli self-assigned this Feb 11, 2023
wyli added a commit that referenced this issue Feb 13, 2023
Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Fixes #5902

### Description
the source image in ResampleToMatch may not have a `filename_or_obj`
when the source image is not created from `LoadImage`

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [x] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [x] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
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