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Add deepedit transforms #2810

Merged
merged 6 commits into from
Aug 27, 2021
Merged

Add deepedit transforms #2810

merged 6 commits into from
Aug 27, 2021

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diazandr3s
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@diazandr3s diazandr3s commented Aug 19, 2021 •
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Signed-off-by: Andres diazandr3s@gmail.com

Description

  • Create folder to add custom transforms and interaction classes form DeepEdit App
  • Add three custom transforms used in DeepEdit App - One of the paradigms available in the MONAI Label platform

Status

Ready/Work in progress/Hold

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

@diazandr3s
Add deepedit transforms
142ee73 
Signed-off-by: Andres <diazandr3s@gmail.com>
@diazandr3s diazandr3s requested a review from wyli August 19, 2021 16:03
@diazandr3s
Run unittests - autofix
c6358c3 
Signed-off-by: Andres <diazandr3s@gmail.com>
@diazandr3s
Update transform
1975d47 
Signed-off-by: Andres <diazandr3s@gmail.com>
@diazandr3s diazandr3s requested a review from Nic-Ma August 23, 2021 21:30
@diazandr3s diazandr3s enabled auto-merge (squash) August 23, 2021 21:31
diazandr3s and others added 3 commits August 27, 2021 02:57
@diazandr3s
Add unit tests for DeepEdit transforms
260917a 
Signed-off-by: Andres <diazandr3s@gmail.com>
@diazandr3s
Merge branch 'dev' into deepeditTransforms
d528d94
@wyli
exclude in min tests.
7a77173 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@diazandr3s diazandr3s merged commit f99ebda into dev Aug 27, 2021
@diazandr3s diazandr3s deleted the deepeditTransforms branch August 27, 2021 09:12
wyli pushed a commit to Borda/MONAI that referenced this pull request Aug 27, 2021
@diazandr3s @wyli
Add deepedit transforms (Project-MONAI#2810)
afcc083 
* Add deepedit transforms

Signed-off-by: Andres <diazandr3s@gmail.com>

* Run unittests - autofix

Signed-off-by: Andres <diazandr3s@gmail.com>

* Update transform

Signed-off-by: Andres <diazandr3s@gmail.com>
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@wyli wyli wyli approved these changes

@Nic-Ma Nic-Ma Awaiting requested review from Nic-Ma

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3 participants
@diazandr3s @wyli @Nic-Ma