Tifffile support in WSIReader #3278
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Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
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@Nic-Ma could you please take a look at this and run |
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/build |
Nic-Ma
reviewed
Nov 8, 2021
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
Nic-Ma
approved these changes
Nov 11, 2021
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/build |
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/build |
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Fixes #3251
Description
This PR adds support for
tifffilein WSIReader to read TIFF files (which is common in histopathology whole slide imaging). Whilecucimandopenslideboth can load patches from large whole slide images without loading the entire image into memory,tifffileloads the entire image into before extracting any patch. Thus memory consideration is needed when usingtifffilefor patch extraction.Status
Ready
Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests.