Intensity augmentation transform

[yanielc]

Signed-off-by: yc7620 yaniel.cabrera20@imperial.ac.uk

Description

Intensity augmentation transform to be used as a means of data augmentation for medical imaging datasets. It was first demonstrated in Intensity Augmentation to Improve Generalizability of Breast Segmentation Across Different MRI Scan Protocols that intensity augmentation helps generalize a model. It has been used in other works such as Image translation for medical image generation: Ischemic stroke lesion segmentation.

The transform works by replacing the intensities of an image by new values uniformly sampled from all possible intensity values in the input image. Below is an example of the application of the transform on an MRI image:

Status

Work in progress

Types of changes

• Non-breaking change (fix or new feature that would not break existing functionality).
• Breaking change (fix or new feature that would cause existing functionality to change).
• New tests added to cover the changes.
• Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
• Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
• In-line docstrings updated.
• Documentation updated, tested make html command in the docs/ folder.

[yanielc]

Hi, not entirely sure why there are 22 changed files. I only added transforms/intensity/array.py and transforms/__init__.py to my commit.

[wyli]

/black

[wyli]

Probably your local version of black is out of date...

[wyli]

/black

[wyli]

/build