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Full lazy resampling implementation#6011

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atbenmurray wants to merge 38 commits intodevProject-MONAI/MONAI:devfrom lr_developmentProject-MONAI/MONAI:lr_developmentCopy head branch name to clipboard

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Commits on Jan 17, 2023

• Initial commit of consolidated work from other lazy resampling branches, manually merged with updated dev

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Commits on Jan 24, 2023

• Removing obsolete inverses from invertible spatial transforms (note that the default hasn't been modified yet). Adding tests for functional resize

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Commits on Feb 1, 2023

• Finalizing implementation of various functional spatial transforms

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Commits on Feb 6, 2023

• Additional functionality

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• Merging numerous fixes that were done remotely

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Commits on Feb 7, 2023

• Refactoring in preparation for inverse

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• Most of invert done

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Commits on Feb 8, 2023

• Implementing inverse on lazy transforms

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• Merge branch 'lr_development' of github.com:project-monai/monai into lr_development

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Commits on Feb 12, 2023

• Consolidating changes for invert

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• Merging

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Commits on Feb 13, 2023

• RandZoom updated to pure lazy functions; testing for randomizers started

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Commits on Feb 14, 2023

• Adding matrix analysis for consolidated resample

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• Updated array and dictionary transforms with missing methods; adding skeleton of consolidated resampler; bug fixes on randomizers

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Commits on Feb 15, 2023

• Compose using compose compiler; refactoring to break cyclic dependencies (moved traits to traits.py, moved transforms.utils classes that call back into compose.py out of transforms.utils.py); minor…

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Commits on Feb 16, 2023

• Adding of InvertibleTrait as a base of InvertibleTransform; adding of new compose inverse; minor miscellaneous fixes

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• Brought and made up to date croppad and associated array/dict classes across from old branch; bug fix for swapped parameters in DiscreteRandomizer

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• Merge branch 'lr_development' of github.com:project-monai/monai into lr_development

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Commits on Feb 17, 2023

• Compose2 added compose_compiler param, added croppad prototype lazy functions, consolidated resampler work including unit_translate test function

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Commits on Feb 18, 2023

• Fix to interaction between lazily_apply_op and apply_transforms; fix to MetaMatrix initialisation matrix identification code

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Commits on Mar 5, 2023

• Fix to RandFlip; updated consolidated resampler code

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• Moved ensure_tuple_rep calls to __call__ in RandRotated

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• Moved ensure_tuple_rep inside key iteration

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• Tweaks to rng / rng order for non lazy random transforms; fixes to some lazy transforms

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Commits on Mar 6, 2023

• Removing debug prints from apply_transforms

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Commits on Mar 7, 2023

• Adding RandCroppadd; flagging dictionary Invertd as needing more work with lazy. Renaming inconsistent lazy transform seed / state params. Bug fix for croppad

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Commits on Mar 8, 2023

• Prep for paper

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• Adding suppress rng flag for data loader to avoid it overwriting all rng; bug fixes for rand spatial array lazy transforms

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Commits on Mar 13, 2023

• Disambiguating calls to state and seed in lazy array and dictionary classes

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• Merge branch 'lr_development' of github.com:project-monai/monai into lr_development

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• Removing tests.ipynb from lazy_branch

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Commits on Mar 16, 2023

• Fixing bug in Flipd; fixing bug in RandCroppadd

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Commits on Mar 21, 2023

• Adding in old transforms; work on croppad lazy transforms

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• Resolving conflicts

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Commits on Mar 28, 2023

• Fix for tensor resampling path; work on the mode compatibility / mapping code

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Commits on Mar 31, 2023

• Renamed apply_transforms to apply_pending

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Commits on Apr 13, 2023

• Adding both generic and adaptive resampling functions as underscore

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Commits on Apr 18, 2023

• Making it simple to switch between the generic resampler and an adaptive resampler

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