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6721 bundle syntax # as alias of :: #6955

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merged 6 commits into from
Sep 8, 2023
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@wyli wyli commented Sep 6, 2023

fixes #6721

Description

compatible syntax by normalising any # in ids to ::

from monai.bundle import ConfigParser

config = {
    "my_dims": 2,
    "dims_1": "$@my_dims + 1",
    "my_net": {"_target_": "BasicUNet", "spatial_dims": "@dims_1", "in_channels": 1, "out_channels": 4},
}
# in the example $@my_dims + 1 is an expression, which adds 1 to the value of @my_dims
parser = ConfigParser(config)
print(parser.get_parsed_content("my_net::spatial_dims"))  # returns 3
print(parser.get_parsed_content("my_net#spatial_dims"))  # returns 3

new test cases:

def test_slicing(self):
config = {"test": [1, 2, 3, 4], "test1": "$@test[::]", "test2": "$@test[::-1]", "st": "aten::relu"}
self.assertEqual(ConfigParser(config).test1, [1, 2, 3, 4])
self.assertEqual(ConfigParser(config).test2, [4, 3, 2, 1])
self.assertEqual(ConfigParser(config).st, "aten::relu")

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

@wyli wyli mentioned this pull request Sep 6, 2023
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ericspod commented Sep 7, 2023

This is a simple solution but it appears to work just fine, we can assume there won't be comments ever so there's no issue removing #. An alternative is to use re.split(f"#|{ID_SEP_KEY}", str(id)) or something like this but it doesn't seem necessary.

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli wyli marked this pull request as ready for review September 7, 2023 20:33
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wyli commented Sep 7, 2023

/integration-test

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Thanks, looks good to me.

monai/bundle/reference_resolver.py Show resolved Hide resolved
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
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wyli commented Sep 8, 2023

/build

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wyli commented Sep 8, 2023

/build

@wyli wyli merged commit 8040aa2 into Project-MONAI:dev Sep 8, 2023
36 of 37 checks passed
@wyli wyli deleted the 6721-replace branch September 8, 2023 10:19
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Improve Syntax of Sigils
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