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407 Update ignite tutorial and add MLFlow handler #408

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Nic-Ma merged 1 commit into from
Oct 20, 2021
Merged

407 Update ignite tutorial and add MLFlow handler #408

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103 changes: 59 additions & 44 deletions 3d_segmentation/unet_segmentation_3d_ignite.ipynb
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -105,7 +105,7 @@ The example shows the flexibility of MONAI modules in a PyTorch-based program:
This notebook shows how MONAI may be used in conjunction with the [Catalyst](https://github.com/catalyst-team/catalyst) framework.
#### [unet_segmentation_3d_ignite](./3d_segmentation/unet_segmentation_3d_ignite.ipynb)
This notebook is an end-to-end training & evaluation example of 3D segmentation based on synthetic dataset.
The example is a PyTorch Ignite program and shows several key features of MONAI, especially with medical domain specific transforms and event handlers.
The example is a PyTorch Ignite program and shows several key features of MONAI, especially with medical domain specific transforms and event handlers for profiling (logging, TensorBoard, MLFlow, etc.).
#### [COVID 19-20 challenge baseline](./3d_segmentation/challenge_baseline)
This folder provides a simple baseline method for training, validation, and inference for [COVID-19 LUNG CT LESION SEGMENTATION CHALLENGE - 2020](https://covid-segmentation.grand-challenge.org/COVID-19-20/) (a MICCAI Endorsed Event).
#### [unetr_btcv_segmentation_3d](./3d_segmentation/unetr_btcv_segmentation_3d.ipynb)
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