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@melonipoika melonipoika commented Oct 25, 2021

Fixes #419

Description

Add dependency to nibabel so that it is possible to read nii.gz images

Status

Ready

Testing details:

Run # Pre Processing cell and verify that the image is loaded correctly:

LoadImaged => image shape: (392, 392, 210)
Guidance: [[[145, 66, 180], [105, 66, 180]], []]; Slice Idx: 145

Add dependecy to `nibabel` to read `nii.gz` images.

Signed-off-by: José Alarcón <jose.alarcon@varian.com>
Suggested-by: Richard Brown <rich.brown@kcl.ac.uk>
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@wyli wyli left a comment

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Thanks, it looks good to me.

@wyli wyli merged commit 6c8d367 into Project-MONAI:master Oct 25, 2021
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
Add dependecy to `nibabel` to read `nii.gz` images.

Signed-off-by: José Alarcón <jose.alarcon@varian.com>
Suggested-by: Richard Brown <rich.brown@kcl.ac.uk>
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Missing dependencies in deepgrow tutorial

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