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Add visualization tutorial transform image #448

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merged 6 commits into from
Nov 22, 2021
Merged

Add visualization tutorial transform image #448

merged 6 commits into from
Nov 22, 2021

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Nic-Ma
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@Nic-Ma Nic-Ma commented Nov 19, 2021 •
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Fixes #436 .

Description

This PR added tutorial to show the visualization methods of matshow3d, 3d GIF, blend image, matplotlib, etc.

Status

Ready

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  • Notebook runs automatically ./runner [-p <regex_pattern>]

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[DLMED] add visualization tutorial
c7ff0db 
Signed-off-by: Nic Ma <nma@nvidia.com>
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[DLMED] add image
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[DLMED] update notebook
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[DLMED] add reference image
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[DLMED] fix PEP error
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@Nic-Ma Nic-Ma marked this pull request as ready for review November 22, 2021 08:45
@Nic-Ma Nic-Ma changed the title [WIP] Add visualization tutorial transform image Add visualization tutorial transform image Nov 22, 2021
@Nic-Ma Nic-Ma requested review from wyli, ericspod and rijobro November 22, 2021 08:46
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looks good to me. this notebook is 2.8 megabytes, is it possible to make it smaller?

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Nic-Ma commented Nov 22, 2021

looks good to me. this notebook is 2.8 megabytes, is it possible to make it smaller?

Hi @wyli ,

I think maybe that because this notebook contains many images? like these notebooks are big:
https://github.com/Project-MONAI/tutorials/blob/master/modules/postprocessing_transforms.ipynb
https://github.com/Project-MONAI/tutorials/blob/master/3d_segmentation/spleen_segmentation_3d_lightning.ipynb

Thanks.

@wyli wyli merged commit 0d31bdc into master Nov 22, 2021
@wyli wyli deleted the 436-add-visualization-tutorial branch November 22, 2021 09:24
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rijobro commented Nov 22, 2021

thanks @Nic-Ma. I guess we could have used the Resample function to downsample the images to decrease the size of this notebook.

wyli added a commit that referenced this pull request Dec 1, 2021
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boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
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boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
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boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
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@wyli wyli wyli approved these changes

@ericspod ericspod Awaiting requested review from ericspod

@rijobro rijobro Awaiting requested review from rijobro

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tutorial for data visualisations: matshow3d, blend image, itk widgets
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