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… `revert_sliding_window()`, and `slide_dataset()` methods. (#192)
# Conflicts: # mipcandy/sliding_window.py
…rvisedSWDataset` classes, and updated related methods. (#192)
…indow` and new `SupervisedSWDataset`. Removed unused `roi` function. Improved device and dataset initialization logic. (#133)
…` in `benchmark.py`. Cleaned up unused imports and methods in `unet.py`. (#133)
…cessing in `benchmark.py`. (#133)
…sion compatibility. (#192)
…d` and `Pad3d`, enhancing 2D/3D shape handling. (#192)
…d` and `Pad3d`, enhancing 2D/3D shape handling. (#192)
…d `overlap`, ensuring consistent dimensions. (#192)
# Conflicts: # mipcandy/data/sliding_window.py
…ning 2D/3D window padding and unfolding logic. (#192)
… zero-padding in sliding window filenames. (#192)
…atibility with default behavior. (#192)
…d flexibility in metric comparison. (#133)
…ts` for `num_classes >= 3`, added logging for validation metrics, and removed unused loss override in UNetTrainer.
…2` for `DiceBCELossWithLogits`.
…global_previous_index` and fixed `diff` computation to handle edge cases with insufficient metric history.
…previous_index` handling in `diff` computation.
…ts; removed unused model compilation logic in training setup.
…nose low dice scores.
… to diagnose low dice scores." This reverts commit 8a16a1f.
…ic loading logic in dataset handling.
…w `DeepSupervisionWrapper`, target preparation logic, and updates to forward, backward, and validation workflows.
…nd dtype consistency.
… case handling, refined `convert_idx` logic, and reinstated `oversample_foreground` method. (#133)
…ss.validation_mode` dynamically.
…x_from_indices` and ensuring background classes are safely removed. Improved class selection in ROI sampling with weighted probabilities.
… in derived objects.
…eatmap` computation.
…ine model saving logic.
…emory usage during training.
…e counts and updated annotation generation logic for consistency.
…updated call sites accordingly, and adjusted annotation logic to handle 2D and 3D cases.
…undant logic and using uniform selection for classes.
…`inspection.py` to simplify logic.
…r enhanced training flexibility.
…ation for improved training performance and flexibility.
…licing logic in `inspection.py` for consistency.
…handling, and streamlined foreground bounding box selection.
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See #133.