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Add new end_reasons: api_request and device_data_error #14

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merged 2 commits into from
Sep 5, 2024
Merged

Add new end_reasons: api_request and device_data_error #14

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bb5cb73
add api_request and device_data_error end_reasons
Psy-Fer Sep 3, 2024
1ddbfcc
bump version to v0.1.2
Psy-Fer Sep 3, 2024
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2 changes: 1 addition & 1 deletion src/_version.py
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Original file line number Diff line number Diff line change
@@ -1 +1 @@
__version__="0.1.1"
__version__="0.1.2"
10 changes: 7 additions & 3 deletions src/blue_crab.py
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Original file line number Diff line number Diff line change
Expand Up @@ -91,6 +91,8 @@ def s2p_end_reason_convert(end_reason):
"data_service_unblock_mux_change": (p5.EndReasonEnum.DATA_SERVICE_UNBLOCK_MUX_CHANGE, True),
"signal_positive": (p5.EndReasonEnum.SIGNAL_POSITIVE, False),
"signal_negative": (p5.EndReasonEnum.SIGNAL_NEGATIVE, False),
"api_request": (p5.EndReasonEnum.API_REQUEST, False),
"device_data_error": (p5.EndReasonEnum.DEVICE_DATA_ERROR, False),
}

try:
Expand All @@ -112,6 +114,8 @@ def p2s_end_reason_convert(end_reason):
"data_service_unblock_mux_change": 3,
"signal_positive": 4,
"signal_negative": 5,
"api_request": 6,
"device_data_error": 7,
}

try:
Expand Down Expand Up @@ -336,7 +340,7 @@ def m2m_worker(args, input_queue, slow5_out):
s5 = slow5.Open(slow5_filepath, 'w', rec_press=args.compress, sig_press=args.sig_compress, DEBUG=0)
header = {}
sampling_rate = 0
end_reason_labels = ["unknown", "mux_change", "unblock_mux_change", "data_service_unblock_mux_change", "signal_positive", "signal_negative"]
end_reason_labels = ["unknown", "mux_change", "unblock_mux_change", "data_service_unblock_mux_change", "signal_positive", "signal_negative", "api_request", "device_data_error"]
# get header info in first read
# Get pod5 reads
count = 0
Expand Down Expand Up @@ -420,7 +424,7 @@ def m2s_worker(args, pod5_filepath_set, slow5_out):
s5 = slow5.Open(slow5_out, 'w', rec_press=args.compress, sig_press=args.sig_compress, DEBUG=0)
header = {}
sampling_rate = 0
end_reason_labels = ["unknown", "mux_change", "unblock_mux_change", "data_service_unblock_mux_change", "signal_positive", "signal_negative"]
end_reason_labels = ["unknown", "mux_change", "unblock_mux_change", "data_service_unblock_mux_change", "signal_positive", "signal_negative", "api_request", "device_data_error"]
# get header info in first read
# Get pod5 reads
count = 0
Expand Down Expand Up @@ -504,7 +508,7 @@ def s2s_worker(args, pfile, slow5_out):
s5 = slow5.Open(slow5_filepath, 'w', rec_press=args.compress, sig_press=args.sig_compress, DEBUG=0)
header = {}
sampling_rate = 0
end_reason_labels = ["unknown", "mux_change", "unblock_mux_change", "data_service_unblock_mux_change", "signal_positive", "signal_negative"]
end_reason_labels = ["unknown", "mux_change", "unblock_mux_change", "data_service_unblock_mux_change", "signal_positive", "signal_negative", "api_request", "device_data_error"]
# get header info in first read
# Get pod5 reads
count = 0
Expand Down
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