Add test and option to disable online retrieve rules #694
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Changes proposed in this Pull Request
Minor improvement.
snakemake
tries to access the internet for remote providers likeHTTP
while constructing the DAG. This prevents the execution of a workflow even when copies of all remote files are already locally available, as the DAG construction will simply fail.This PR add's an option (
config[enable][retrieve] = {auto,True,False}
) and an automatic check (auto
) on whether an internet connection can be made. If enabled/an internet connection is available, theretrieve.smk
rules are included in the workflow. If disabled / no internet connection is available, the rules are not included, thus not part of the potential DAG and thussnakemake
can run.Encountered this problem locally when I had no internet connection and on a HPC cluster recently.
Interesting addition for PyPSA-EUR?
Checklist
envs/environment.yaml
.config.default.yaml
.doc/configtables/*.csv
.doc/release_notes.rst
is added.