Update workshop09-pres-fr.Rmd #51
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| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - pres-fr/** | |
| - .github/workflows/deploy_pres-fr.yml | |
| repository_dispatch: | |
| types: [pong_presentation] | |
| name: render-presentation-fr | |
| jobs: | |
| repository-dispatch-received: | |
| name: Dispatch received - starting all jobs here | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Event Information | |
| run: | | |
| echo "Event '${{ github.event.action }}' received from '${{ github.event.client_payload.repository }}'" | |
| - name: Acknowledge - dispatch response to received pong | |
| if: github.event.action == 'pong_presentation' | |
| run: | | |
| curl -X POST https://api.github.com/repos/QCBSRworkshops/templateWorkshops/dispatches \ | |
| -H 'Accept: application/vnd.github.everest-preview+json' \ | |
| -u ${{ secrets.ACCESS_TOKEN }} \ | |
| --data '{"event_type": "acknowledged_presentation_en", "client_payload": { "repository": "'"$GITHUB_REPOSITORY"'" }}' | |
| presentation-fr-job: | |
| name: Render the presentation for this workshop | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| defaults: | |
| run: | |
| working-directory: pres-fr | |
| steps: | |
| - name: 🛎️ Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: 💻 Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 4.2.2 | |
| - name: 💾 Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: r-${{ hashFiles('DESCRIPTION') }} | |
| - name: 💻 Install pandoc and pandoc citeproc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: 💻 Install R packages and dependencies if needed | |
| run: | | |
| Rscript -e 'list.of.packages <- c("rmarkdown", "xaringan", "remotes"); | |
| new.packages <- list.of.packages[!(list.of.packages %in% installed.packages()[,"Package"])]; | |
| if(length(new.packages) > 0) { | |
| install.packages(new.packages, dependencies = TRUE) | |
| print(paste0("The following package was installed:", new.packages))} else | |
| if(length(new.packages) == 0) { | |
| print("All packages have been previously installed and fetched from cache.")}' | |
| - name: 🧶 Render presentation | |
| run: Rscript -e 'rmarkdown::render("workshop09-pres-fr.Rmd")' | |
| - name: 📜 Create script using purl | |
| run: | | |
| Rscript -e 'knitr::purl("workshop09-pres-fr.Rmd",documentation = 0,output = "workshop09-script-fr.R"); | |
| script <- readLines("workshop09-script-fr.R"); | |
| script <- gsub("## ", "", script); | |
| script <- script[-(1:34)]; | |
| write(script, file = "workshop09-script-fr.R"); | |
| file.copy("workshop09-script-fr.R", "_pres/")' | |
| - name: 🔺 Upload artifact containing the presentation | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: pres-fr | |
| path: pres-fr/ | |
| # Need to first create an empty gh-pages branch | |
| # see https://pkgdown.r-lib.org/reference/deploy_site_github.html | |
| # and also add secrets for an ACCESS_TOKEN | |
| checkout-and-deploy: | |
| name: Checkout and deploy the presentation within the gh-pages repository | |
| runs-on: ubuntu-latest | |
| needs: presentation-fr-job | |
| steps: | |
| - name: 🛎️ Checkout again | |
| uses: actions/checkout@v3 | |
| with: | |
| persist-credentials: false | |
| - name: 🔻 Download artifact containing the presentation | |
| uses: actions/download-artifact@v3 | |
| with: | |
| # Artifact name | |
| name: pres-fr # optional | |
| # Destination path | |
| path: pres-fr/ # optional | |
| - name: 💎 Deploy to GitHub Pages | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| token: ${{ secrets.ACCESS_TOKEN }} | |
| branch: gh-pages # The branch the action should deploy to. | |
| folder: pres-fr/ | |
| target-folder: pres-fr # The folder the action should deploy | |
| clean: true |