Lamy-Besnier et al. (2024) The human blood harbors a phageome which differs in Crohn’s disease
available on BioRXiv: https://www.biorxiv.org/content/10.1101/2024.06.04.597176v1
The data necessary to reproduce the analysis can be found in the "Data" folder.
It is composed of 3 files:
- HBP_counts.csv: table containing the counts of each OTU in each sample.
- HBP_tax.csv: table containing all the data corresponding to each OTU.
- HBP_metadata.csv: table containing all the metadata corresponding to each samples
The 3 files are required to the reproduce the analysis presented in the manuscript.
The code corresponding to the data analysis can be found in the "Code" folder.
It is composed of a single RMarkdown file which generates all the figures corresponding to the manuscript.
Feel free to report any code-related issue or question in the corresponding section of the GitHub repository or by emailing the corresponding authors of the manuscript.