Only use rust two qubit weyl coordinates functions #11982
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Summary
This commit is a follow up to #11019 that uses the rust implementation of computing the weyl coordinates for a unitary and the transform_to_magic_basis functions everywhere. Previously they were only used internally by the num_basis_gates() rust function to estimate the number of basis gates needed for a decomposition of a given unitary. This will likely be superseded by #11946 when that is working, but this is mainly an incremental step working towards finishing #11946 that proves the internal rust functions work in the larger decomposer code to isolate the source of failures in #11946.
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