Changes to accommodate changed post-processing parameters

Issue #451 Changes to config.yml files and to generic recognizer tests to accommodate changes to post-processing parameters.
QutEcoacoustics · Feb 25, 2021 · c75a8a8 · c75a8a8
1 parent dcc9559
commit c75a8a8
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Showing 5 changed files with 35 additions and 38 deletions.
diff --git a/docs/guides/Ecosounds.NinoxBoobook.yml b/docs/guides/Ecosounds.NinoxBoobook.yml
@@ -51,21 +51,21 @@ PostProcessing:
         ExpectedPeriod: 0.4
 
     # 3: Remove events whose duration lies outside 3 SDs of an expected value.
-    Duration:
-        ExpectedDuration: 0.14
-        DurationStandardDeviation: 0.01
+    #Duration:
+    #    ExpectedDuration: 0.14
+    #    DurationStandardDeviation: 0.01
 
     # 4: Remove events whose bandwidth lies outside 3 SDs of an expected value.
     Bandwidth:
         ExpectedBandwidth: 280
         BandwidthStandardDeviation: 40
 
-    # 5: Filter the events for excess activity in their sidebands,
-    # i.e. upper and lower buffer zones
-    SidebandActivity:
-        LowerHertzBuffer: 150
-        UpperHertzBuffer: 400
-        MaxAverageSidebandDecibels: 3.0
+    # 5: Filter the events for excess activity in their sidebands
+    SidebandAcousticActivity:
+        LowerSidebandWidth: 150
+        UpperSidebandWidth: 0
+        MaxBackgroundDecibels: 12
+        #MaxActivityDecibels: 12
 
 # Options to save results files
 # 1: Available options for saving spectrograms (case-sensitive): [Never | Always | WhenEventsDetected]

diff --git a/src/AnalysisConfigFiles/RecognizerConfigFiles/Towsey.NinoxBoobook.yml b/src/AnalysisConfigFiles/RecognizerConfigFiles/Towsey.NinoxBoobook.yml
@@ -52,19 +52,20 @@ PostProcessing:
 
     # 3: Remove events whose duration lies outside 3 SDs of an expected value.
     #Duration:
-        ExpectedDuration: 0.14
-        DurationStandardDeviation: 0.01        
+    #    ExpectedDuration: 0.14
+    #    DurationStandardDeviation: 0.01        
 
     # 4: Remove events whose bandwidth lies outside 3 SDs of an expected value.
- #   Bandwidth:
-        ExpectedBandwidth: 280
-        BandwidthStandardDeviation: 40
+    #Bandwidth:
+    #    ExpectedBandwidth: 280
+    #    BandwidthStandardDeviation: 40
 
     # 5: Filter the events for excess activity in their sidebands, i.e. upper and lower buffer zones
-    SidebandActivity:
-        LowerHertzBuffer: 150
-        UpperHertzBuffer: 400
-        MaxAverageSidebandDecibels: 3.0
+    #SidebandAcousticActivity:
+        LowerSidebandWidth: 150
+        UpperSidebandWidth: 400
+        MaxBackgroundDecibels: 12
+        MaxActivityDecibels: 12
 
 # Options to save results files
 # 1: Available options for saving spectrograms (case-sensitive): [False/Never | True/Always | WhenEventsDetected]

diff --git a/src/AnalysisConfigFiles/RecognizerConfigFiles/Towsey.NinoxStrenua.yml b/src/AnalysisConfigFiles/RecognizerConfigFiles/Towsey.NinoxStrenua.yml
@@ -61,25 +61,21 @@ PostProcessing:
         ExpectedPeriod: 0.92
 
     # 3: Remove events whose duration lies outside 3 SDs of an expected value.
-    Duration:
-        FilterOnDuration: false
-        ExpectedDuration: 0.14
-        DurationStandardDeviation: 0.01        
+    #Duration:
+    #    ExpectedDuration: 0.14
+    #    DurationStandardDeviation: 0.01        
 
     # 4: Remove events whose bandwidth lies outside 3 SDs of an expected value.
     Bandwidth:
-        FilterOnBandwidth: true
         ExpectedBandwidth: 120
         BandwidthStandardDeviation: 15
 
     # 5: Filter the events for excess acoustic activity in their sidebands, i.e. upper and lower buffer zones
     SidebandAcousticActivity:
         LowerSidebandWidth: 0
         UpperSidebandWidth: 0
-        FilterEventsOnSidebandBackground: false
-        MaxBackgroundDecibels: 6.0
-        FilterEventsOnSidebandActivity: false
-        MaxActivityDecibels: 9.0
+        MaxBackgroundDecibels: null
+        MaxActivityDecibels: null
 
 # Various options to save results files
 # 1: Available options for saving spectrograms (case-sensitive): [False/Never | True/Always | WhenEventsDetected]

diff --git a/src/AnalysisConfigFiles/RecognizerConfigFiles/Towsey.PteropusSpecies.yml b/src/AnalysisConfigFiles/RecognizerConfigFiles/Towsey.PteropusSpecies.yml
@@ -15,6 +15,16 @@ AbbreviatedSpeciesName: PteropusSp
 #    Typically the lowest harmonic will lie between 1200 Hz and 3000 Hz and the higher ones evenly spaced.
 #    This is the tricky bit due to variability but may work to use spectrum auto-correlation.
 
+## Specifically for AnalyzeLongRecording
+
+# Resample rate must be 2 X the desired Nyquist
+ResampleRate: 22050
+
+# SegmentDuration: units=seconds;    
+SegmentDuration: 60
+# SegmentOverlap: units=seconds;
+SegmentOverlap: 0
+
 # Common settings
 BgNoiseThreshold: 3.0
 
@@ -54,14 +64,6 @@ Profiles:
   #  <<: *STANDARD
   #  DctDuration: 0.3
 
-# Resample rate must be 2 X the desired Nyquist
-ResampleRate: 22050
-
-## Specifically for AnalyzeLongRecording
-# SegmentDuration: units=seconds;    
-SegmentDuration: 60
-# SegmentOverlap: units=seconds;
-SegmentOverlap: 0
 # Available options (case-sensitive): [False/Never | True/Always | WhenEventsDetected]
 SaveIntermediateWavFiles: Never
 SaveIntermediateCsvFiles: false

diff --git a/tests/Acoustics.Test/AnalysisPrograms/Recognizers/GenericRecognizerTests.cs b/tests/Acoustics.Test/AnalysisPrograms/Recognizers/GenericRecognizerTests.cs
@@ -160,8 +160,6 @@ public void TestOscillationAlgorithm()
                             BgNoiseThreshold = 0.0,
                             MaxHertz = 1050,
                             MinHertz = 700,
-                            BottomHertzBuffer = 0,
-                            TopHertzBuffer = 0,
                             SpeciesName = "DTMF",
                             DctDuration = 1.0,
                             MinOscillationFrequency = 1,
@@ -190,7 +188,7 @@ public void TestOscillationAlgorithm()
                     {
                         UpperSidebandWidth = 0,
                         LowerSidebandWidth = 0,
-                        MaxBackgroundDecibels = 0,
+                        MaxBackgroundDecibels = 0.0,
                     },
                 },
             };