Merge branch 'master' into mfassignr-tools

RECETOX · Aug 7, 2024 · 19b171f · 19b171f
2 parents 12a4128 + 44e9371
commit 19b171f
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diff --git a/tools/waveica/waveica.xml b/tools/waveica/waveica.xml
@@ -1,4 +1,4 @@
-<tool id="waveica" name="WaveICA" version="@TOOL_VERSION@+galaxy7" profile="21.09">
+<tool id="waveica" name="WaveICA" version="@TOOL_VERSION@+galaxy8" profile="21.09">
     <description>removal of batch effects for untargeted metabolomics data</description>
     <macros>
         <import>macros.xml</import>

diff --git a/tools/waveica/waveica_wrapper.R b/tools/waveica/waveica_wrapper.R
@@ -194,6 +194,7 @@ enumerate_groups <- function(group) {
     group[grepl("blank", tolower(group))] <- 0
     group[grepl("sample", tolower(group))] <- 1
     group[grepl("qc", tolower(group))] <- 2
+    group[grepl("standard", tolower(group))] <- 3
 
     return(group)
 }