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Force input of rt correction in recetox-aplcms to be a collection #596

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merged 2 commits into from
Oct 21, 2024
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Force input of rt correction in recetox-aplcms to be a collection #596

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7ceacc8
Force input of rt correction in recetox-aplcms to be a collection
hechth Oct 21, 2024
3e2d9bc
fixed typo
hechth Oct 21, 2024
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8 changes: 4 additions & 4 deletions tools/recetox_aplcms/recetox_aplcms_correct_time.xml
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@@ -1,4 +1,4 @@
<tool id="recetox_aplcms_correct_time" name="recetox-aplcms - correct time" version="@TOOL_VERSION@+galaxy0" profile="21.09">
<tool id="recetox_aplcms_correct_time" name="recetox-aplcms - correct time" version="@TOOL_VERSION@+galaxy1" profile="21.09">
<description>correct retention time across samples for peak alignment</description>
<macros>
<import>macros.xml</import>
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</configfiles>

<inputs>
<param label="Input clustered features table" name="features_table" type="data" format="parquet"
help="Mass spectrometry clustered features table." />
<param label="Input template features table" name="template" type="data" format="parquet"
<param label="Input clustered feature tables" name="features_table" type="data_collection" collection_type="list" format="parquet"
help="Mass spectrometry clustered features tables." />
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why is multiple=true not enough?

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It kind of needs to be a collection - otherwise It doesn't make much sense. Also, the way how I want to use the tool in a workflow, if my one input is a list of lists, I'd expect the other one to be a list - this is currently not possible in the workflow editor.

<param label="Input template feature table" name="template" type="data" format="parquet"
help="Template features table." />
</inputs>

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