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conda env #20

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Aug 31, 2021
Merged

conda env #20

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baa6ac4
Added conda env config files
xtrojak Aug 20, 2021
c6d58d2
Fixed issues in meta file such that conda build works
xtrojak Aug 25, 2021
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25 changes: 25 additions & 0 deletions conda/environment-build.yaml
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name: recetox-aplcms-build
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- anaconda-client
- conda-build
- conda-verify
- r-base >=3.5
- r-mass
- r-rgl
- bioconductor-mzR
- r-splines2
- r-doparallel
- r-foreach
- r-iterators
- r-snow
- r-gbm
- r-e1071
- r-randomForest
- r-rocr
- r-rocs
- r-rcpp
- r-arrow
24 changes: 24 additions & 0 deletions conda/environment-dev.yaml
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name: recetox-aplcms
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- r-base >= 3.5
- r-devtools
- r-biocmanager
- r-mass
- r-rgl
- bioconductor-mzR
- r-splines2
- r-doparallel
- r-foreach
- r-iterators
- r-snow
- r-gbm
- r-e1071
- r-randomForest
- r-rocr
- r-rocs
- r-rcpp
- r-arrow
72 changes: 72 additions & 0 deletions conda/meta.yaml
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{% set name = "recetox-aplcms" %}
{% set version = "0.9.3" %}
{% set github = "https://github.com/RECETOX/recetox-aplcms" %}

package:
name: "r-{{ name|lower }}"
version: "{{ version }}"

source:
path: ..

build:
number: 0
noarch: generic
rpaths:
- lib/
- lib/R/lib/
script: R CMD INSTALL --build .


requirements:
host:
- r-base >=3.5
- r-mass
- r-rgl
- bioconductor-mzR
- r-splines2
- r-doparallel
- r-foreach
- r-iterators
- r-snow
- r-gbm
- r-e1071
- r-randomForest
- r-rocr
- r-rocs
- r-rcpp

run:
- r-base >=3.5
- r-devtools
- r-biocmanager
- r-mass
- r-rgl
- bioconductor-mzR
- r-splines2
- r-doparallel
- r-foreach
- r-iterators
- r-snow
- r-gbm
- r-e1071
- r-randomForest
- r-rocr
- r-rocs
- r-rcpp
- r-arrow

test:
commands:
- $R -e "library(recetox.aplcms)"

about:
home: "{{ github }}"
license: GPL2.0
summary: apLCMS is a software which generates a feature table from a batch of LC/MS spectra. A modified fork of the original apLCMS by Tianwei Yu.

extra:
maintainers:
- RECETOX/conda
identifiers:
- doi:10.1093/bioinformatics/btp291