Implemented new version for clustering

[hechth]

• Implemented new simple clustering computation method based on only numerical tolerances and using dplyr operations.
• Implemented unit tests for new clustering method
• Implemented unit tests for find_mz_tolerance
• Implemented unit test for find.tol.time

Closes #198
Closes #199

[xtrojak]

@hechth Why did you remove all the .Rd files in cec9f8a?

[hechth]

@hechth Why did you remove all the .Rd files in cec9f8a?

They are auto generated anyway, so I think they just increase the repository size unnecessarily

[xtrojak]

@hechth Why did you remove all the .Rd files in cec9f8a?

They are auto generated anyway, so I think they just increase the repository size unnecessarily

I thought they are maybe needed somewhere, but I guess you are right. Would be nice to note this in the changelog.

[xtrojak]

Good job with the rewrite of clustering, looks awesome!

[zargham-ahmad]

Looks good!

[zargham-ahmad]

"computes something"?

[zargham-ahmad]

@hechth Does deleting man files really make any difference in the repo size because they were around 80 kb anyways? Also, I think the CI seems to be failing because of it No man pages found in package ‘recetox.aplcms’

[codecov]

Codecov Report

Patch coverage: 97.34% and project coverage change: -0.29 ⚠️

Comparison is base (0543377) 66.13% compared to head (d840dd7) 65.84%.

❗ Current head d840dd7 differs from pull request most recent head b5a61ce. Consider uploading reports for the commit b5a61ce to get more accurate results

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #201      +/-   ##
==========================================
- Coverage   66.13%   65.84%   -0.29%     
==========================================
  Files          23       23              
  Lines        2616     2685      +69     
==========================================
+ Hits         1730     1768      +38     
- Misses        886      917      +31     

Impacted Files	Coverage Δ
R/adjust.time.R	63.63% <ø> (ø)
R/find.tol.time.R	48.00% <ø> (-42.00%)	⬇️
R/prof.to.features.R	87.19% <0.00%> (ø)
R/remove_noise.R	58.33% <ø> (ø)
R/compute_clusters.R	89.15% <100.00%> (+7.52%)	⬆️
R/feature.align.R	96.38% <100.00%> (ø)
R/find_mz_tolerance.R	96.77% <100.00%> (ø)
R/hybrid.R	100.00% <100.00%> (ø)
R/recover.weaker.R	98.32% <100.00%> (ø)
R/unsupervised.R	99.29% <100.00%> (ø)
... and 1 more

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