Conversion from the attenuated to exponential Radon transform #317
Workflow file for this run
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| name: 'Build, Test RTK with CUDA' | |
| on: [push,pull_request] | |
| env: | |
| itk-git-tag: "v5.4.0" | |
| itk-module-deps: "CudaCommon@cae7c93c2f6d4c5b3cb5f6e5ce4a97686e626bf7" | |
| jobs: | |
| build-test-cxx: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 3 | |
| matrix: | |
| os: [self-hosted-linux, self-hosted-windows] | |
| include: | |
| - os: self-hosted-linux | |
| c-compiler: "gcc" | |
| cxx-compiler: "g++" | |
| cmake-build-type: "MinSizeRel" | |
| - os: self-hosted-windows | |
| c-compiler: "cl.exe" | |
| cxx-compiler: "cl.exe" | |
| cmake-build-type: "Release" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install ninja | |
| - name: Get specific version of CMake, Ninja | |
| uses: lukka/get-cmake@v3.24.2 | |
| - name: self-hosted cleanup | |
| shell: bash | |
| run: | | |
| rm -fr ../ITK | |
| rm -fr ../ITK-build | |
| rm -fr ../build | |
| - name: Download ITK | |
| run: | | |
| cd .. | |
| git clone https://github.com/InsightSoftwareConsortium/ITK.git | |
| cd ITK | |
| git checkout ${{ env.itk-git-tag }} | |
| - name: Build ITK | |
| if: matrix.os != 'self-hosted-windows' | |
| shell: bash | |
| run: | | |
| cd .. | |
| mkdir ITK-build | |
| cd ITK-build | |
| MODULE_ARGS="" | |
| MODULE_DEPS=${{ env.itk-module-deps }} | |
| for MODULE_INFO in ${MODULE_DEPS//:/ }; do | |
| MODULE_NAME=`(echo ${MODULE_INFO} | cut -d'@' -f 1)` | |
| MODULE_ARGS="${MODULE_ARGS} -DModule_${MODULE_NAME}:BOOL=ON" | |
| MODULE_TAG=`(echo ${MODULE_INFO} | cut -d'@' -f 2)` | |
| if [[ -n ${MODULE_TAG} ]]; then | |
| MODULE_ARGS+=" -DModule_${MODULE_NAME}_GIT_TAG:STRING=${MODULE_TAG}" | |
| fi | |
| done | |
| if [[ -n $MODULE_ARGS ]]; then | |
| echo "Building with modules: $MODULE_ARGS" | |
| fi | |
| cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF ${{ env.itk-cmake-options }} ${MODULE_ARGS} -GNinja ../ITK | |
| ninja | |
| - name: Build ITK | |
| if: matrix.os == 'self-hosted-windows' | |
| shell: pwsh | |
| run: | | |
| Set-PSDebug -Trace 1 | |
| cd .. | |
| & "C:\Program Files\Microsoft Visual Studio\2022\Community\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation | |
| mkdir ITK-build | |
| cd ITK-build | |
| $MODULE_ARGS="" | |
| $MODULE_DEPS="${{ env.itk-module-deps }}" | |
| $MODULES_LIST = $MODULE_DEPS.split(":") | |
| foreach($MODULE_INFO in $MODULES_LIST) { | |
| if($MODULE_ARGS) { $MODULE_ARGS += " " } | |
| $MODULE_NAME = $MODULE_INFO.split("@")[0] | |
| $MODULE_ARGS += "-DModule_$MODULE_NAME`:BOOL=ON" | |
| $MODULE_TAG = $MODULE_INFO.split("@")[1] | |
| if($MODULE_TAG) { | |
| $MODULE_ARGS += " -DModule_$MODULE_NAME`_GIT_TAG:STRING=$MODULE_TAG" | |
| } | |
| } | |
| if($MODULE_ARGS) { | |
| echo "Building with parameters: ${{ env.itk-cmake-options }} $MODULE_ARGS" | |
| } | |
| cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF ${{ env.itk-cmake-options }} $MODULE_ARGS.split(" ") -GNinja ../ITK | |
| ninja | |
| - name: Fetch CTest driver script | |
| run: | | |
| curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O | |
| - name: Configure CTest script | |
| shell: bash | |
| run: | | |
| operating_system="${{ matrix.os }}" | |
| cat > dashboard.cmake << EOF | |
| set(CTEST_SITE "GitHubActions") | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/" CTEST_SOURCE_DIRECTORY) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../build" CTEST_BINARY_DIRECTORY) | |
| set(dashboard_source_name "${GITHUB_REPOSITORY}") | |
| if((ENV{GITHUB_REF_NAME} MATCHES "master" OR ENV{GITHUB_REF_NAME} MATCHES "main")) | |
| set(branch "-master") | |
| set(dashboard_model "Continuous") | |
| else() | |
| set(branch "-${GITHUB_REF}") | |
| set(dashboard_model "Experimental") | |
| endif() | |
| set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}") | |
| set(CTEST_UPDATE_VERSION_ONLY 1) | |
| set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL}) | |
| set(CTEST_BUILD_CONFIGURATION "Release") | |
| set(CTEST_CMAKE_GENERATOR "Ninja") | |
| set(CTEST_CUSTOM_WARNING_EXCEPTION | |
| \${CTEST_CUSTOM_WARNING_EXCEPTION} | |
| # macOS Azure VM Warning | |
| "ld: warning: text-based stub file" | |
| ${{ env.warnings-to-ignore }} | |
| ) | |
| set(dashboard_no_clean 1) | |
| set(ENV{CC} ${{ matrix.c-compiler }}) | |
| set(ENV{CXX} ${{ matrix.cxx-compiler }}) | |
| if(WIN32) | |
| set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}") | |
| endif() | |
| set(dashboard_cache " | |
| ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-build | |
| BUILD_TESTING:BOOL=ON | |
| ${{ env.cmake-options }} | |
| ") | |
| string(TIMESTAMP build_date "%Y-%m-%d") | |
| message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}") | |
| message("CTEST_SITE = \${CTEST_SITE}") | |
| include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake) | |
| EOF | |
| cat dashboard.cmake | |
| - name: Build and test | |
| if: matrix.os != 'self-hosted-windows' | |
| run: | | |
| ctest --output-on-failure -j 2 -V -S dashboard.cmake ${{ env.ctest-options }} | |
| - name: Build and test | |
| if: matrix.os == 'self-hosted-windows' | |
| shell: pwsh | |
| run: | | |
| & "C:\Program Files\Microsoft Visual Studio\2022\Community\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation | |
| ctest --output-on-failure -j 2 -V -S dashboard.cmake ${{ env.ctest-options }} |