Merge pull request #559 from arobert01/command-line-osem

ENH: add flag in rtkosem application to store the normalization images
RTKConsortium · Nov 24, 2023 · 38df5e8 · 38df5e8
2 parents 0a84555 + efdc4e1
commit 38df5e8
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diff --git a/applications/rtkosem/rtkosem.cxx b/applications/rtkosem/rtkosem.cxx
@@ -90,7 +90,7 @@ main(int argc, char * argv[])
 
   osem->SetNumberOfIterations(args_info.niterations_arg);
   osem->SetNumberOfProjectionsPerSubset(args_info.nprojpersubset_arg);
-
+  osem->SetStoreNormalizationImages(!args_info.nostorenormalizationimages_flag);
   REPORT_ITERATIONS(osem, rtk::OSEMConeBeamReconstructionFilter<OutputImageType>, OutputImageType)
 
   // Write

diff --git a/applications/rtkosem/rtkosem.ggo b/applications/rtkosem/rtkosem.ggo
@@ -9,3 +9,4 @@ option "niterations" n "Number of iterations"                                  i
 option "input"     i "Input volume"              string          no
 option "nprojpersubset" - "Number of projections processed between each update of the reconstructed volume (several for OSEM, all for MLEM)" int no default="1"
 option "betaregularization" - "Hyperparameter for the regularization"          float  no   default="0"
+option "nostorenormalizationimages"       - "Do not store the normalization images during the reconstruction"   flag   off