Changelog since 2024-08-23 deployment to TEST: Sprint 6 changes for Hammerhead release

[edeutsch]

Please add your substantial commits since master was deployed to TEST on the date in the title by EDITING this post with a terse Changelog entry.

• Improve inferred mode patch for KG2 'treats_or_applied..'-type edges (exclude Semmeddb)
• Fixed BiolinkHelper's mixin reasoning (use DAG representation)
• Log a warning if we cannot connect to a valid autocomplete database
• Security update for urllib3 package to version 1.26.19
• Security update for tornado package to version 6.4.1
• Move KG2 to Plover2.0 (standalone TRAPI service)
• Update Pathfinder to query Plover2.0 in batch
• Update General Concepts Blocklist with additional concepts.
• Move from BatchSpanExporter to SimpleSpanExporter for exporting OTel traces
• Use UBERON as a source for KG2 concept subclass reasoning
• Restrict Node Categories for xCRG paths and choosing predicates lower down the biolink model
• Fix bug with overwritten node attributes returned from Plover2.0
• Roll out KG2 version 2.10.1 (Clinical Trials KP ingest)

ARAX UI:

• Handle attributes that have array (list) values (UI issue with displaying multiple source_record_urls #2346)
• Rename quick_defs.json to .js since it is a Javascript file (Autocomplete not working on the new arax.ncats.io #2365)
• Restore loading of a response via URL (via magic "hhttp" prefix)
• For very long queries, show the number of days it has been running (if > 1) in System Activity
• Add quick-links to external URLs for ClinicalTrials and DrugApprovals KPs in Settings (Add 'Post to CTKP' and 'Post to DAKP' buttons to UI for the relay #2366)
• Update some of those URLs to TRAPI 1.5 endpoints
• Update ARAXi DSL helper JSON
• Add "Total" row to Testing summary view

[edeutsch]

Merged into TEST. Obsoleted by #2404