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scripts: Fix user self-hosting dependency in update_deps.py
The documentation states that users can override where to take a dependency from via variables like VULKAN_HEADERS_INSTALL_DIR, however the helper.cmake written by the scripts/CMakeLists.txt FORCE updates the cache variable to the location inside known_good.json, practically overwriting the user-provided path given on the CLI using -D, also going into the cache.
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