The source code is written in Python (version 3.5.1) using Numpy (version 1.10.4), Scipy (version 0.17.0) and Matplotlib (version 1.5.1). The source code is distributed under the GPLv3 and a copy of the License is provided along with the source code. The repository is organized as follows:
├── article
│ ├── article_bak.tex
│ ├── article.pdf
│ ├── article.tex
│ ├── crossref.yaml
│ ├── detorakis-2016.bcf
│ ├── detorakis-2016.bib
│ ├── detorakis-2016.md
│ ├── detorakis-2016.pdf
│ ├── detorakis-2016.run.xml
│ ├── detorakis-2016.tex
│ ├── figs
│ │ ├── const.pdf
│ │ ├── Figure1.pdf
│ │ ├── Figure2.pdf
│ │ ├── Figure3.pdf
│ │ ├── Figure4.pdf
│ │ ├── Figure5.pdf
│ │ └── pulse.pdf
│ ├── LICENSE
│ ├── pandoc-template.tex
│ ├── README.md
│ ├── rescience-logo.pdf
│ └── rescience-template.tex
├── code
│ ├── LICENSE
│ ├── neuron_model.py
│ ├── params
│ │ ├── params_figure1.cfg
│ │ ├── params_figure2.cfg
│ │ ├── params_figure3.cfg
│ │ ├── params_figure4b.cfg
│ │ ├── params_figure4.cfg
│ │ ├── params_figure5a.cfg
│ │ ├── params_figure5b.cfg
│ │ └── params_figure5c.cfg
│ ├── plot_figures.py
│ ├── README.md
│ ├── run_all.py
│ ├── simulations.py
│ ├── stimulus.npy
│ └── tools.py
├── data
│ ├── data1.dat
│ ├── data.dat
│ ├── LICENSE
│ └── README.md
├── lalal
├── LICENSE
├── notebook
│ └── README.md
└── README.md
- article -> This folder contains the accompanying text.
- code -> Here is the source code along with all the plotting functions.
- data -> This folder is normally empty, but it is used by the source code for storing the results of the simulations.
- notebook -> There is no available notebook for this implementation.
[1] : Multiple dynamical modes of thalamic relay neurons: rhythmic bursting and intermittent phase-locking, Wang, X-J, Neuroscience, 59(1), pg.21-31, 1994.