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Fix tests for Julia v1.11 #422

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Fix tests for Julia v1.11 #422

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02138fd
fix tests
bvdmitri Oct 15, 2024
2d41b2d
CI has less accuracy?
bvdmitri Oct 15, 2024
4995b72
attempt to fix last test
bvdmitri Oct 15, 2024
0c9230b
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bvdmitri Oct 15, 2024
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bvdmitri Oct 15, 2024
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4 changes: 1 addition & 3 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -18,8 +18,6 @@ jobs:
steps:
- uses: actions/checkout@v2
- uses: julia-actions/setup-julia@v1
with:
version: '1.10'
- run: make lint
test:
name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
Expand All @@ -33,7 +31,7 @@ jobs:
fail-fast: false
matrix:
version:
- '1.10'
- '1.11'
os:
- ubuntu-latest
arch:
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4 changes: 3 additions & 1 deletion Project.toml
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Expand Up @@ -66,6 +66,7 @@ MatrixCorrectionTools = "1.2.0"
Optim = "1.0.0"
Optimisers = "0.2, 0.3"
PositiveFactorizations = "0.2"
REPL = "1.11.0"
Random = "1.9"
Requires = "1"
Rocket = "1.8.0"
Expand Down Expand Up @@ -95,9 +96,10 @@ Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2"
Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
PkgBenchmark = "32113eaa-f34f-5b0d-bd6c-c81e245fc73d"
ReTestItems = "817f1d60-ba6b-4fd5-9520-3cf149f6a823"
REPL = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
TestSetExtensions = "98d24dd4-01ad-11ea-1b02-c9a08f80db04"

[targets]
test = ["Aqua", "CpuId", "ReTestItems", "Test", "Pkg", "Logging", "InteractiveUtils", "TestSetExtensions", "Coverage", "Dates", "Distributed", "Documenter", "BenchmarkCI", "BenchmarkTools", "PkgBenchmark", "StableRNGs", "Optimisers", "DiffResults", "ExponentialFamilyProjection"]
test = ["Aqua", "CpuId", "ReTestItems", "Test", "Pkg", "Logging", "InteractiveUtils", "TestSetExtensions", "Coverage", "Dates", "Distributed", "Documenter", "BenchmarkCI", "BenchmarkTools", "PkgBenchmark", "StableRNGs", "Optimisers", "DiffResults", "ExponentialFamilyProjection", "REPL"]
2 changes: 1 addition & 1 deletion test/ext/ReactiveMPProjectionExt/rules/out_tests.jl
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Expand Up @@ -6,7 +6,7 @@

q_ins_m_out_incomings = [
(FactorizedJoint((NormalMeanVariance(2, 2),)), NormalMeanVariance(0, 1)),
(FactorizedJoint((Gamma(3, 4),)), Gamma(2, 3)),
(FactorizedJoint((Gamma(2, 1),)), Gamma(2, 2)),
(FactorizedJoint((Beta(5, 4),)), Beta(5, 5)),
(FactorizedJoint((Rayleigh(4),)), Rayleigh(5.2)),
(FactorizedJoint((Geometric(0.3),)), Geometric(0.9)),
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6 changes: 5 additions & 1 deletion test/nodes/nodes_tests.jl
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Expand Up @@ -144,15 +144,19 @@ end
end

@testitem "@node macro should generate a documentation entry for a newly specified node" begin
using REPL # `REPL` changes the docstring output format

struct DummyNodeForDocumentationStochastic end
struct DummyNodeForDocumentationDeterministic end

@node DummyNodeForDocumentationStochastic Stochastic [out, x, (y, aliases = [yy])]

@node DummyNodeForDocumentationDeterministic Deterministic [out, (x, aliases = [xx, xxx]), y]

documentation = string(Base.doc(Base.Docs.Binding(ReactiveMP, :is_predefined_node)))
binding = @doc(ReactiveMP.is_predefined_node)
@test !isnothing(binding)

documentation = string(binding)
@test occursin(r"DummyNodeForDocumentationStochastic.*Stochastic.*out, x, y \(or yy\)", documentation)
@test occursin(r"DummyNodeForDocumentationDeterministic.*Deterministic.*out, x \(or xx, xxx\), y", documentation)
end
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4 changes: 2 additions & 2 deletions test/rules/continuous_transition/x_tests.jl
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Expand Up @@ -28,7 +28,7 @@

metal = CTMeta(transformation)
Ly = rand(rng, dy, dy)
μy, Σy = rand(rng, dy), Ly * Ly'
μy, Σy = rand(rng, dy), Ly * Ly' + dydx * I

qy = MvNormalMeanCovariance(μy, Σy)
qa = MvNormalMeanCovariance(vec(mA), diageye(dydx))
Expand Down Expand Up @@ -79,7 +79,7 @@

metal = CTMeta(transformation)
Ly = rand(rng, dy, dy)
μy, Σy = rand(rng, dy), Ly * Ly'
μy, Σy = rand(rng, dy), Ly * Ly' + dydx * I

qy = MvNormalMeanCovariance(μy, Σy)
qa = MvNormalMeanCovariance(vec(mA), diageye(dydx))
Expand Down
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