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Attempt to adjust template for AFNI binary to make it work on Debian #601

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Attempt to adjust template for AFNI binary to make it work on Debian #601

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12c5c39
[DATALAD RUNCMD] use snapshots repo for elderly libxp6
yarikoptic Mar 27, 2024
6509324
afni: demand libjpeg-dev and not specific turbo or lib version (will …
yarikoptic Mar 27, 2024
08deeec
Replace listing of multiarch-support with fetching .debs from snapshots
yarikoptic Mar 27, 2024
82b42c7
Try to go with libpng-dev instead of elderly libpng12 pkg from snapshots
yarikoptic Mar 27, 2024
b212296
get precommit config from master
Remi-Gau Apr 3, 2024
272dc24
[DATALAD RUNCMD] format changed files
Remi-Gau Apr 3, 2024
7c81b80
Merge remote-tracking branch 'upstream/master' into pr/yarikoptic/601
Remi-Gau Apr 3, 2024
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16 changes: 8 additions & 8 deletions neurodocker/templates/afni.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -26,16 +26,15 @@ binaries:
- gsl-bin
- libcurl4-openssl-dev
- libgl1-mesa-dri
- libjpeg-turbo8-dev
- libjpeg-dev
- libglu1-mesa-dev
- libglib2.0-0
- libglw1-mesa
- libgomp1
- libjpeg62
- libpng-dev
- libssl-dev
- libudunits2-dev
- libxm4
- multiarch-support
- netpbm
- python-is-python3
- python3-pip
Expand Down Expand Up @@ -73,8 +72,9 @@ binaries:
- unzip
- ncurses-compat-libs
debs:
- http://mirrors.kernel.org/debian/pool/main/libx/libxp/libxp6_1.0.2-2_amd64.deb
- http://snapshot.debian.org/archive/debian-security/20160113T213056Z/pool/updates/main/libp/libpng/libpng12-0_1.2.49-1%2Bdeb7u2_amd64.deb
- https://snapshot.debian.org/archive/debian-security/20221017T140424Z/pool/updates/main/g/glibc/multiarch-support_2.28-10%2Bdeb10u2_amd64.deb
- https://snapshot.debian.org/archive/debian/20140820T220424Z/pool/main/libx/libxp/libxp6_1.0.2-2_amd64.deb

instructions: |
{{ self.install_dependencies() }}
{% if self.install_python3.lower() in ["true", "1", "y"] -%}
Expand Down Expand Up @@ -125,6 +125,7 @@ source:
- libgsl-dev
- libmotif-dev
- libnetpbm10-dev
- libpng-dev
- libxext-dev
- libxi-dev
- libxmu-headers
Expand All @@ -133,7 +134,6 @@ source:
- m4
- make
- mesa-common-dev
- multiarch-support
- tcsh
- zlib1g-dev
yum:
Expand Down Expand Up @@ -163,8 +163,8 @@ source:
- which
- zlib-devel
debs:
- http://mirrors.kernel.org/debian/pool/main/libx/libxp/libxp6_1.0.2-2_amd64.deb
- http://snapshot.debian.org/archive/debian-security/20160113T213056Z/pool/updates/main/libp/libpng/libpng12-0_1.2.49-1%2Bdeb7u2_amd64.deb
- https://snapshot.debian.org/archive/debian-security/20221017T140424Z/pool/updates/main/g/glibc/multiarch-support_2.28-10%2Bdeb10u2_amd64.deb
- https://snapshot.debian.org/archive/debian/20140820T220424Z/pool/main/libx/libxp/libxp6_1.0.2-2_amd64.deb
instructions: |
{{ self.install_dependencies() }}
{%- if self.install_python3.lower() in ["true", "1", "y"] %}
Expand Down
4 changes: 2 additions & 2 deletions neurodocker/templates/spm12.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -34,9 +34,9 @@ binaries:
- libxmu6
- libxpm-dev
- libxt6
- multiarch-support
debs:
- http://mirrors.kernel.org/debian/pool/main/libx/libxp/libxp6_1.0.2-2_amd64.deb
- https://snapshot.debian.org/archive/debian-security/20221017T140424Z/pool/updates/main/g/glibc/multiarch-support_2.28-10%2Bdeb10u2_amd64.deb
- https://snapshot.debian.org/archive/debian/20140820T220424Z/pool/main/libx/libxp/libxp6_1.0.2-2_amd64.deb
yum:
- curl
- unzip
Expand Down
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