RO-Crate 1.1.0

docs/1.0/index.md

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 ---
 layout: default
 title: RO-Crate 1.0
-no-exclude: true
+exclude: true
 ---
 <!--
    Copyright 2019 University of Technology Sydney

docs/1.1/.metadata.md

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+# RO-Crate Metadata Specification 1.1
+
+* Permalink: <https://w3id.org/ro/crate/1.1>
+* Published: 2020-10-30
+* Publisher: [researchobject.org](https://www.researchobject.org/) community
+* Status: Recommendation
+* JSON-LD context: <https://w3id.org/ro/crate/1.1/context>
+* This version: <https://w3id.org/ro/crate/1.1>
+* Alternate formats: [Web pages](https://www.researchobject.org/ro-crate/1.1/),
+  [single-page HTML](https://github.com/ResearchObject/ro-crate/releases/download/1.1.0/ro-crate-1.1.0.html),
+  [PDF](https://github.com/ResearchObject/ro-crate/releases/download/1.1.0/ro-crate-1.1.0.html),
+  [RO-Crate JSON-LD](ro-crate-metadata.json), [RO-Crate HTML](ro-crate-preview.html)
+* Previous version: <https://w3id.org/ro/crate/1.0>
+* Cite as: <https://doi.org/10.5281/zenodo.4031327> (this version)
+  <https://doi.org/10.5281/zenodo.3406497> (any version)
+* Editors: [Peter Sefton](https://orcid.org/0000-0002-3545-944X), [Eoghan Ó Carragáin](https://orcid.org/0000-0001-8131-2150),  [Stian Soiland-Reyes](https://orcid.org/0000-0001-9842-9718)
+* Authors: [Peter Sefton](https://orcid.org/0000-0002-3545-944X), [Eoghan Ó Carragáin](https://orcid.org/0000-0001-8131-2150),  [Stian Soiland-Reyes](https://orcid.org/0000-0001-9842-9718), [Oscar Corcho](https://orcid.org/0000-0002-9260-0753), [Daniel Garijo](https://orcid.org/0000-0003-0454-7145), [Raul Palma](https://orcid.org/0000-0003-4289-4922), [Frederik Coppens](https://orcid.org/0000-0001-6565-5145), [Carole Goble](https://orcid.org/0000-0003-1219-2137), [José María Fernández](https://orcid.org/0000-0002-4806-5140), [Kyle Chard](https://orcid.org/0000-0002-7370-4805), [Jose Manuel Gomez-Perez](https://orcid.org/0000-0002-5491-6431), [Michael R Crusoe](https://orcid.org/0000-0002-2961-9670), [Ignacio Eguinoa](https://orcid.org/0000-0002-6190-122X), [Nick Juty](https://orcid.org/0000-0002-2036-8350), [Kristi Holmes](https://orcid.org/0000-0001-8420-5254), [Jason A. Clark](https://orcid.org/0000-0002-3588-6257), [Salvador Capella-Gutierrez](https://orcid.org/0000-0002-0309-604X), [Alasdair J. G. Gray](https://orcid.org/0000-0002-5711-4872), [Stuart Owen](https://orcid.org/0000-0003-2130-0865), [Alan R Williams](https://orcid.org/0000-0003-3156-2105), [Giacomo Tartari](https://orcid.org/0000-0003-1130-2154), [Finn Bacall](https://orcid.org/0000-0002-0048-3300), [Thomas Thelen](https://orcid.org/0000-0002-1756-2128), [Hervé Ménager](https://orcid.org/0000-0002-7552-1009), [Laura Rodríguez Navas](https://orcid.org/0000-0003-4929-1219), [Paul Walk](https://orcid.org/0000-0003-1541-5631), [brandon whitehead](https://orcid.org/0000-0002-0337-8610), [Mark Wilkinson](https://orcid.org/0000-0001-6960-357X), [Paul Groth](https://orcid.org/0000-0003-0183-6910), [Erich Bremer](https://orcid.org/0000-0003-0223-1059), [LJ Garcia Castro](https://orcid.org/0000-0003-3986-0510), [Karl Sebby](https://orcid.org/0000-0001-6022-9825), [Alexander Kanitz](https://orcid.org/0000-0002-3468-0652), [Ana Trisovic](https://orcid.org/0000-0003-1991-0533), [Gavin Kennedy](https://orcid.org/0000-0003-3910-0474), [Mark Graves](https://orcid.org/0000-0003-3486-8193), [Jasper Koehorst](https://orcid.org/0000-0001-8172-8981), [Simone Leo](https://orcid.org/0000-0001-8271-5429)
+
+
+
+<!-- Add new RO-Crate team members at end -->
+
+
+See <https://w3id.org/ro/crate> for further details about RO-Crate.
+
+<small>
+This specification is Copyright 2017-2020 University of Technology Sydney, 
+The University of Manchester UK and the RO-Crate contributors.
+</small>
+
+<small>
+Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
+</small>
+
+<small>
+<http://www.apache.org/licenses/LICENSE-2.0>
+</small>
+
+<small>
+Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
+</small>
+
+**Note**: The RO-Crate [JSON-LD context](https://w3id.org/ro/crate/1.1/context) and JSON-LD examples within this specification are distributed under [CC0 1.0 Universal (CC0 1.0) Public Domain Dedication][CC0]. 
+
+> The key words MUST, MUST NOT, REQUIRED, SHALL, SHALL NOT, SHOULD, SHOULD NOT, RECOMMENDED, MAY, and OPTIONAL in this document are to be interpreted as described in [RFC 2119].
+
+

docs/1.1/.references.md

@@ -0,0 +1,218 @@
+---
+title: References
+---
+
+
+# References
+<!--  Below are reference links not rendered in HTML, see
+https://kramdown.gettalong.org/syntax.html#reference-links
+
+Be aware that this file is used by RO-Crate 1.1 and later
+versions of the specification, 
+DO NOT DELETE entries and 
+DO NOT change VERSIONED links.
+
+This file is included by the others using this
+%include line (excluding comment/endcomment)
+and is also rendered into the end of the PDF.
+
+{% comment %}
+  {% include references.liquid %}
+{% endcomment %}
+
+-->
+
+* \[BagIt\]: <https://en.wikipedia.org/wiki/BagIt>
+* \[BagIt profile\]: <https://github.com/ruebot/bagit-profiles>
+* \[BIBO\]: <http://purl.org/ontology/bibo/interviewee>
+* \[conformsTo\]: <http://purl.org/dc/terms/conformsTo>
+* \[CURIE\]: <https://www.w3.org/TR/curie/>
+* \[DataCite\]: <https://www.datacite.org/>
+* \[DataCite Schema\]: <https://schema.datacite.org/>
+* \[DataCite Schema v4.0\]: <https://schema.datacite.org/meta/kernel-4.0/metadata.xsd>
+* \[DCAT\]: <https://www.w3.org/TR/vocab-dcat/>
+* \[Exif\]: <https://en.wikipedia.org/wiki/Exif>
+* \[Flattened Document Form\]: <https://json-ld.org/spec/latest/json-ld/#flattened-document-form>
+* \[FRAPO\]: <https://www.sparontologies.net/ontologies/frapo>
+* \[geonames\]: <https://www.geonames.org/>
+* \[git\]: <https://git-scm.com/>
+* \[hasFile\]: <https://pcdm.org/2016/04/18/models#hasFile>
+* \[hasMember\]: <https://pcdm.org/2016/04/18/models#hasMember>
+* \[isOutputOf\]: <https://sparontologies.github.io/frapo/current/frapo.html#d4e526>
+* \[JSON\]: <http://json.org/>
+* \[JSON-LD\]: <https://json-ld.org/>
+* \[linked data\]: <https://en.wikipedia.org/wiki/Linked_data>
+* \[OCFL\]: <https://ocfl.io/>
+* \[OCFL Object\]: <https://ocfl.io/1.0/spec/#object-spec>
+* \[ORCID\]: <https://orcid.org>
+* \[Pairtree\]: <https://confluence.ucop.edu/display/Curation/PairTree>
+* \[Pairtree specification\]: <https://confluence.ucop.edu/display/Curation/PairTree?preview=/14254128/16973838/PairtreeSpec.pdf>
+* \[PCDM\]: <https://github.com/duraspace/pcdm/wiki>
+* \[Pronom\]: <https://www.nationalarchives.gov.uk/PRONOM/Default.aspx>
+* \[RepositoryCollection\]: <https://pcdm.org/2016/04/18/models#Collection>
+* \[RepositoryObject\]: <https://pcdm.org/2016/04/18/models#Object>
+* \[ResearchObject\]: <https://www.researchobject.org/>
+* \[Schema.org\]: <http://schema.org>
+* \[WorkflowSketch\]: <http://wf4ever.github.io/ro/2016-01-28/roterms/#Sketch>
+
+* \[Omeka\]: <https://omeka.org>
+* \[Linked Data principles\]: <https://5stardata.info/en/>
+* \[open standards from W3C\]: <https://www.w3.org/standards/>
+* \[CC-BY\]: <https://creativecommons.org/licenses/by/4.0/>
+* \[GPL 3.0\]: <https://www.gnu.org/licenses/gpl-3.0>
+* \[CC0\]: <https://creativecommons.org/publicdomain/zero/1.0/>
+* \[Exif\]: <https://en.wikipedia.org/wiki/Exif>
+* \[HTML 5\]: <https://www.w3.org/TR/html52/>
+* \[W3C RDF 1.1 formats\]: <https://www.w3.org/TR/rdf11-primer/>
+* \[Research Organization Registry URIs\]: <https://ror.org/>
+* \[Google Dataset Search\]: <https://developers.google.com/search/docs/data-types/dataset>
+* \[JSON-LD 1.0\]: <https://www.w3.org/TR/2014/REC-json-ld-20140116/>
+* \[flattened\]: <https://www.w3.org/TR/json-ld/#flattened-document-form>
+* \[compacted\]: <https://www.w3.org/TR/json-ld/#compacted-document-form>
+* \[FORCE11 Data Citation Principles\]: <https://doi.org/10.25490/a97f-egyk>
+* \[RFC3986 section 3.3\]: <https://tools.ietf.org/html/rfc3986#section-3.3>
+* \[JSON-LD context\]: <https://www.w3.org/TR/json-ld/#the-context>
+* \[BagIt UUID identifiers\]: <https://tools.ietf.org/html/draft-soilandreyes-arcp-03#appendix-A.4>
+* \[domainIncludes\]: <http://schema.org/domainIncludes>
+* \[rangeIncludes\]: <http://schema.org/rangeIncludes>
+* \[Schema.org schema\]: <https://schema.org/version/latest/schemaorg-current-http.jsonld>
+* \[rdfs:subClassOf\]: <https://www.w3.org/TR/rdf-schema/#ch_subclassof>
+* \[JSON-LD tooling\]: <https://json-ld.org/#developers>
+* \[JSON-LD flattening\]: <https://www.w3.org/TR/json-ld-api/#flattening-algorithm>
+* \[JSON-LD Expansion\]: <https://www.w3.org/TR/json-ld-api/#expansion>
+* \[JSON-LD base URI\]: <https://www.w3.org/TR/json-ld11/#base-iri>
+* \[JSON-LD expanded form\]: <https://www.w3.org/TR/json-ld11/#expanded-document-form>
+* \[RFC3986 base URI\]: <http://tools.ietf.org/html/rfc3986#section-5.1>
+* \[SPARQL\]: <https://www.w3.org/TR/sparql11-query/>
+* \[RDF triples\]: <https://www.w3.org/TR/rdf11-concepts/>
+* \[Apache Jena\]: <https://jena.apache.org/>
+* \[Fuseki\]: <https://jena.apache.org/documentation/fuseki2/>
+* \[RDF 1.1 note on IRIs\]: <https://www.w3.org/TR/rdf11-concepts/#note-iris>
+* \[ARCP\]: <https://tools.ietf.org/id/draft-soilandreyes-arcp-03.html>
+* \[ARCP BagIt\]: <https://tools.ietf.org/html/draft-soilandreyes-arcp-03#appendix-A.4>
+* \[media type\]: <https://www.iana.org/assignments/media-types>
+* \[JSON-LD media type\]: <https://www.w3.org/TR/json-ld/#application-ld-json>
+* \[RFC7231 response\]: <https://tools.ietf.org/html/rfc7231#section-3.1.1.5>
+* \[BIBO ontology\]: <http://neologism.ecs.soton.ac.uk/bibo.html>
+* \[ro-terms\]: <https://github.com/ResearchObject/ro-terms>
+* \[function parameter definitions\]: <https://en.wikipedia.org/wiki/Parameter_(computer_programming)>
+* \[Best Practice Recipes for Publishing RDF Vocabularies\]: <https://www.w3.org/TR/swbp-vocab-pub/>
+
+* \[Action\]: <http://schema.org/Action>
+* \[ActionStatusType\]: <http://schema.org/ActionStatusType>
+* \[ActiveActionStatus\]: <http://schema.org/ActiveActionStatus>
+* \[Class\]: <http://schema.org/Class>
+* \[CompletedActionStatus\]: <http://schema.org/CompletedActionStatus>
+* \[ComputerLanguage\]: <http://schema.org/ComputerLanguage>
+* \[CreateAction\]: <http://schema.org/CreateAction>
+* \[CreativeWork\]: <http://schema.org/CreativeWork>
+* \[DataDownload\]: <http://schema.org/DataDownload>
+* \[DateTime\]: <https://schema.org/DateTime>
+* \[Dataset\]: <http://schema.org/Dataset>
+* \[FailedActionStatus\]: <http://schema.org/FailedActionStatus>
+* \[File\]: <http://schema.org/MediaObject>
+* \[Journal\]: <http://schema.org/Periodical>
+* \[GeoCoordinates\]: <http://schema.org/GeoCoordinates>
+* \[ImageObject\]: <http://schema.org/ImageObject>
+* \[MediaObject\]: <http://schema.org/MediaObject>
+* \[Organization\]: <http://schema.org/Organization>
+* \[Person\]: <http://schema.org/Person>
+* \[PotentialActionStatus\]: <http://schema.org/PotentialActionStatus>
+* \[Place\]: <http://schema.org/Place>
+* \[Product\]: <http://schema.org/Product>
+* \[Property\]: <http://schema.org/Property>
+* \[PropertyValue\]: <http://schema.org/PropertyValue>
+* \[ScholarlyArticle\]: <http://schema.org/ScholarlyArticle>
+* \[SoftwareApplication\]: <http://schema.org/SoftwareApplication>
+* \[SoftwareSourceCode\]: <http://schema.org/SoftwareSourceCode>
+* \[UpdateAction\]: <http://schema.org/UpdateAction>
+* \[WebSite\]: <http://schema.org/WebSite>
+
+* \[about\]: <http://schema.org/about>
+* \[accountablePerson\]: <http://schema.org/accountablePerson>
+* \[actionStatus\]: <http://schema.org/actionStatus>
+* \[additionalType\]: <http://schema.org/additionalType>
+* \[affiliation\]: <http://schema.org/affiliation>
+* \[agent\]: <http://schema.org/agent>
+* \[alternateName\]: <http://schema.org/alternateName>
+* \[author\]: <http://schema.org/author>
+* \[citation\]: <http://schema.org/citation>
+* \[contact\]: <http://schema.org/accountablePerson>
+* \[contactPoint\]: <http://schema.org/contactPoint>
+* \[contactType\]: <http://schema.org/contactType>
+* \[contentLocation\]: <http://schema.org/contentLocation>
+* \[contentSize\]: <http://schema.org/contentSize>
+* \[contributor\]: <http://schema.org/contributor>
+* \[copyrightHolder\]: <http://schema.org/copyrightHolder>
+* \[creator\]: <http://schema.org/creator>
+* \[dateCreated\]: <http://schema.org/dateCreated>
+* \[datePublished\]: <http://schema.org/datePublished>
+* \[defaultValue\]: <http://schema.org/defaultValue>
+* \[description\]: <http://schema.org/description>
+* \[distribution\]: <http://schema.org/distribution>
+* \[email\]: <http://schema.org/email>
+* \[encodingFormat\]: <http://schema.org/encodingFormat>
+* \[endTime\]: <http://schema.org/endTime>
+* \[error\]: <http://schema.org/error>
+* \[event\]: <http://schema.org/event>
+* \[familyName\]: <http://schema.org/familyName>
+* \[funder\]: <http://schema.org/funder>
+* \[geo\]: <http://schema.org/geo>
+* \[givenName\]: <http://schema.org/givenName>
+* \[hasPart\]: <http://schema.org/hasPart>
+* \[identifier\]: <http://schema.org/identifier>
+* \[IndividualProduct\]: <http://schema.org/IndividualProduct>
+* \[instrument\]: <http://schema.org/instrument>
+* \[keywords\]: <http://schema.org/keywords>
+* \[license\]: <http://schema.org/license>
+* \[memberOf\]: <http://schema.org/memberOf>
+* \[name\]: <http://schema.org/name>
+* \[object\]: <http://schema.org/object>
+* \[phone\]: <http://schema.org/phone>
+* \[programmingLanguage\]: <http://schema.org/programmingLanguage>
+* \[publisher\]: <http://schema.org/publisher>
+* \[relatedItem\]: <http://schema.org/relatedItem>
+* \[result\]: <http://schema.org/result>
+* \[sameAs\]: <http://schema.org/sameAs>
+* \[sdLicense\]: <http://schema.org/sdLicense>
+* \[sdPublisher\]: <http://schema.org/sdPublisher>
+* \[sdDatePublished\]: <https://schema.org/sdDatePublished>
+* \[startTime\]: <http://schema.org/startTime>
+* \[temporalCoverage\]: <http://schema.org/temporalCoverage>
+* \[thumbnail\]: <http://schema.org/thumbnail>
+* \[translationOf\]: <http://schema.org/translationOf>
+* \[translator\]: <http://schema.org/translator>
+* \[url\]: <http://schema.org/url>
+* \[valueRequired\]: <http://schema.org/valueRequired>
+* \[version\]: <http://schema.org/version>
+
+* \[creativeWorkStatus\]: <http://schema.org/creativeWorkStatus>
+* \[funding\]: <https://github.com/schemaorg/schemaorg/pull/2618>
+* \[isBasedOn\]: <http://schema.org/isBasedOn>
+* \[maintainer\]: <http://schema.org/maintainer>
+* \[producer\]: <http://schema.org/producer>
+* \[runtimePlatform\]: <http://schema.org/runtimePlatform>
+* \[softwareRequirements\]: <http://schema.org/softwareRequirements>
+* \[targetProduct\]: <http://schema.org/targetProduct>
+* \[conditionsOfAccess\]: <http://schema.org/conditionsOfAccess>
+* \[dateModified\]: <http://schema.org/dateModified>
+* \[image\]: <http://schema.org/image>
+* \[Grant\]: <http://schema.org/Grant>
+* \[Project\]: <http://schema.org/Project>
+* \[subjectOf\]: <http://schema.org/subjectOf>
+* \[mainEntityOfPage\]: <http://schema.org/mainEntityOfPage>
+* \[WebPage\]: <https://schema.org/WebPage>
+
+* \[input\]: <https://bioschemas.org/types/ComputationalWorkflow/0.1-DRAFT-2020_07_21/#input>
+* \[output\]: <https://bioschemas.org/types/ComputationalWorkflow/0.1-DRAFT-2020_07_21/#output>
+* \[FormalParameter\]: <https://bioschemas.org/types/FormalParameter/0.1-DRAFT-2020_07_21/>
+* \[ComputationalWorkflow\]: <https://bioschemas.org/types/ComputationalWorkflow/0.1-DRAFT-2020_07_21/>
+* \[ComputationalWorkflow profile\]: <https://bioschemas.org/profiles/ComputationalWorkflow/0.5-DRAFT-2020_07_21/>
+* \[FormalParameter profile\]: <https://bioschemas.org/profiles/FormalParameter/0.1-DRAFT-2020_07_21/>
+
+* \[RFC 2119\]: <https://tools.ietf.org/html/rfc2119>
+* \[RFC 3986\]: <https://tools.ietf.org/html/rfc3986>
+* \[RFC 6838\]: <https://tools.ietf.org/html/rfc6838>
+* \[RFC 7159\]: <https://tools.ietf.org/html/rfc7159>
+* \[RFC 8493\]: <https://tools.ietf.org/html/rfc8493>
+

docs/1.1/README.md

@@ -0,0 +1,38 @@
+---
+layout: default
+title: RO-Crate 1.1
+sort: 1
+excerpt: |
+  This document specifies a method, known as RO-Crate (Research Object Crate), of organizing file-based data with associated metadata, using Linked Data principles, in both human and machine readable formats, with the ability to include additional domain-specific metadata.
+
+  The core of RO-Crate is a JSON-LD file, the RO-Crate Metadata File. This file contains structured metadata about the dataset as a whole and, optionally, about some or all of its files. This provides a simple way to, for example, assert the authors (e.g. people, organizations) of the RO-Crate or one its files, or to capture more complex provenance for files, such as how they were created using software and equipment. 
+
+  While providing the formal specification for RO-Crate, this document also aims to be a practical guide for software authors to create tools for generating and consuming research data packages, with explanation by examples.   
+---
+<!--
+   Copyright 2019-2020 University of Technology Sydney
+   Copyright 2019-2020 The University of Manchester UK 
+   Copyright 2019-2020 RO-Crate contributors <https://github.com/ResearchObject/ro-crate/graphs/contributors>
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
+-->
+
+
+
+{% include_relative _metadata.liquid  %}
+
+## Table of Contents
+
+{% include list.liquid all=true %}
+
+{% include references.liquid %}