Health-unhealth-Classifier-CNN

This repo conains:

CNN classifer writen in python

1. Scripts to train CNN classifier from images
2. Scripts to test images in trained models
3. Scripts to submit jobs for HPC using slurm

Preprocessing of HC imaging for test and training image sets

1. Initial processing - crop and down sample
2. Image grids - 17X17
3. segement around nuclei

CellProfiler pipelines for feature extraction