Discussions

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  How do I diffuse a backbone of n length around an active site?

  danielguion asked Dec 22, 2023 in Q&A · Unanswered

  

  

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  Is it possible to do partial diffusion on a single loop in an interface?

  ostannick asked Jan 9, 2024 in Q&A · Unanswered

  

  

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  Question on Binder Design

  jamesrgraham asked Mar 7, 2024 in Q&A · Unanswered

  

  

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  Training procedure

  jregio asked May 9, 2024 in Q&A · Unanswered

  

  

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  Generating a 'dual' protein binder

  KodyKlupt asked Aug 19, 2024 in Q&A · Unanswered

  

  

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  Training process

  rubencr14 asked Aug 26, 2024 in Q&A · Unanswered

  

  

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  RF diffusion _motif scaffolding with Target

  zarbuk asked Sep 21, 2024 in Q&A · Unanswered

  

  

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  RuntimeError: NVTX functions not installed. Are you sure you have a CUDA build?

  zarbuk asked Mar 30, 2024 in Q&A · Answered

  

  

  

  

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  Running RFdiffusion on Intel macbook pro without Nvidia GPU

  shanghongsim started Jun 4, 2023 in General

  

  

  

  

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  How to simulate protein interoperation?

  linonetwo asked May 16, 2024 in Q&A · Answered

  

  

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  How To Improve Binder Design in Silico Success Rate?

  xinran1129305 asked Dec 21, 2023 in Q&A · Unanswered

  

  

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  Why VSCode is opened?

  linonetwo asked Apr 19, 2024 in Q&A · Answered

  

  

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  Scaffold-based binder design performs much better than de novo binder design, and the scaffold has great influence in binder design

  Huilin-Li started Apr 24, 2024 in Ideas

  

  

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  The Google Colab Notebook stuck forever at os.system("wget -qnc https://files.ipd.uw.edu/krypton/ananas")

  Thomas8081 asked Apr 21, 2024 in Q&A · Closed · Answered

  

  

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  Alphafold - DLBinder

  zarbuk asked Apr 12, 2024 in Q&A · Answered

  

  

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  Binder Design

  zarbuk asked Apr 3, 2024 in Q&A · Answered

  

  

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  Beta model for binder design

  PodevynLoris started Sep 11, 2023 in General

  

  

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  Binder Design Size

  JA-Hull started May 16, 2023 in General

  

  

  

  

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  Google Colab notebook not working

  SebastianMiles started Dec 18, 2023 in General · Closed

  

  

  

  

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  Hotspots on target and scaffold protein for binder desing?

  Cookiemaster33 started Nov 16, 2023 in General

  

  

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  is there a script that extract several states in pdb format from Trajectory files?

  Hyunjoo-ibs started Dec 4, 2023 in General

  

  

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  SE3 enviroment not working

  mateoschaerer started Nov 8, 2023 in General

  

  

  

  

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  The contig input

  markobabic333 started Oct 18, 2023 in General

  

  

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  Carbonic Anhydrase (5yui) active site modelling

  ArnoldAndersson123 started Sep 26, 2023 in General

  

  

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  where will the generated PDB be stored?where is its path?

  frankstanmonster asked Sep 10, 2023 in Q&A · Unanswered

  

  

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