Update dependencies (#570)

* Renovate: dependency PyYAML to v6.0.2

* Renovate: dependency loguru to v0.7.3

* Renovate: dependency pandas to v2.2.3

* Renovate: dependency pytest to v8.3.4

* Renovate: dependency requests to v2.32.3

* Renovate: dependency sqlalchemy to v2.0.36

* Renovate: dependency xnat4tests to v0.3.12

* Renovate: rabbitmq Docker tag to v3.13.7

* Renovate: dependency aio_pika to v9.5.3

* Renovate: dependency alembic to v1.14.0

* Renovate: dependency azure-identity to v1.19.0

* Renovate: dependency azure-storage-blob to v12.24.0

* Renovate: dependency fastapi to v0.115.6

* Renovate: dependency httpx to ==0.28.*

* Renovate: dependency hypothesis to v6.122.3

* Renovate: dependency nibabel to v5.3.2

* Renovate: dependency pyOpenSSL to v24.3.0

* Renovate: dependency pydantic to v2.10.3

* Renovate: dependency pytest-check to v2.4.1

* Renovate: dependency tqdm to v4.67.1

* Renovate: dependency uvicorn to v0.32.1

* Renovate: codecov/codecov-action to v5

* Renovate: dependency jsonpickle to v4

* Renovate: dependency pyarrow to v18

* Renovate: dependency pyftpdlib to v2

---------

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>

.github/workflows/main.yml

@@ -78,7 +78,7 @@ jobs:
                   AZURE_KEY_VAULT_SECRET_NAME: test
 
             - name: Upload coverage reports to Codecov
-              uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673 # v4.5.0
+              uses: codecov/codecov-action@7f8b4b4bde536c465e797be725718b88c5d95e0e # v5.1.1
               with:
                   directory: ${{ matrix.package_dir }}
               env:
@@ -179,7 +179,7 @@ jobs:
 
 
             - name: Upload coverage reports to Codecov
-              uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673 # v4.5.0
+              uses: codecov/codecov-action@7f8b4b4bde536c465e797be725718b88c5d95e0e # v5.1.1
               with:
                 directory: test
               env:

cli/pyproject.toml

@@ -9,7 +9,7 @@ classifiers = ["Programming Language :: Python :: 3"]
 dependencies = [
     "core==0.2.0rc0",
     "click==8.1.7",
-    "tqdm==4.66.4",
+    "tqdm==4.67.1",
 ]
 
 [project.optional-dependencies]

docker-compose.yml

@@ -226,7 +226,7 @@ services:
         restart: "always"
 
     queue:
-        image: rabbitmq:3.13.6-management@sha256:54f115b7c9c619e59b703e326ebfc7fc762f8c7321eee34f6fc0646457fffe20
+        image: rabbitmq:3.13.7-management@sha256:1c32767bb8f7afb93fe99b890c05a250936bc2836fa3fd0154058f3953207095
         hostname: queue-host
         environment:
             RABBITMQ_DEFAULT_USER: ${RABBITMQ_USERNAME}

hasher/pyproject.toml

@@ -8,12 +8,12 @@ requires-python = ">=3.10"
 classifiers = ["Programming Language :: Python :: 3"]
 dependencies = [
     "core==0.2.0rc0",
-    "azure-identity==1.16.1",
+    "azure-identity==1.19.0",
     "azure-keyvault==4.2.0",
-    "fastapi==0.112.0",
-    "hypothesis==6.109.0",
-    "requests==2.32.2",
-    "uvicorn==0.30.4",
+    "fastapi==0.115.6",
+    "hypothesis==6.122.3",
+    "requests==2.32.3",
+    "uvicorn==0.32.1",
 ]
 
 [project.optional-dependencies]

pixl_core/pyproject.toml

@@ -7,35 +7,35 @@ readme = "README.md"
 requires-python = ">=3.9"
 classifiers = ["Programming Language :: Python :: 3"]
 dependencies = [
-    "aio_pika==9.4.2",
-    "azure-identity==1.16.1",
+    "aio_pika==9.5.3",
+    "azure-identity==1.19.0",
     "azure-keyvault==4.2.0",
-    "fastapi==0.112.0",
-    "jsonpickle==3.4.2",
-    "loguru==0.7.2",
-    "pandas==2.2.2",
+    "fastapi==0.115.6",
+    "jsonpickle==4.0.0",
+    "loguru==0.7.3",
+    "pandas==2.2.3",
     "pika==1.3.2",
     "psycopg2-binary==2.9.10",
-    "pyarrow==17.0.0",
-    "pydantic==2.8.2",
+    "pyarrow==18.1.0",
+    "pydantic==2.10.3",
     "python-decouple==3.8",
     "python-slugify==8.0.4",
-    "PyYAML==6.0.1",
-    "requests==2.32.2",
-    "sqlalchemy==2.0.32",
+    "PyYAML==6.0.2",
+    "requests==2.32.3",
+    "sqlalchemy==2.0.36",
     "token-bucket==0.3.0",
     "xnat==0.6.2",
 ]
 
 [project.optional-dependencies]
 test = [
-    "httpx==0.27.*",
-    "pytest==8.3.2",
+    "httpx==0.28.*",
+    "pytest==8.3.4",
     "pytest-asyncio==0.24.0",
-    "pytest-check==2.3.1",
+    "pytest-check==2.4.1",
     "pytest-cov==6.0.0",
     "pytest-pixl==0.2.0rc0",
-    "xnat4tests==0.3.11",
+    "xnat4tests==0.3.12",
 ]
 dev = [
     "mypy",

pixl_dcmd/pyproject.toml

@@ -15,15 +15,15 @@ dependencies = [
     "pydicom==2.4.4",
     "pydicom-data",
     "python-decouple==3.8",
-    "requests==2.32.2",
+    "requests==2.32.3",
     "types-requests~=2.28",
 ]
 
 [project.optional-dependencies]
 test = [
     "core[test]==0.2.0rc0",
     "dcm2niix==1.0.20220715",
-    "nibabel==5.2.1",
+    "nibabel==5.3.2",
 ]
 dev = [
     "core[dev]==0.2.0rc0",

pixl_export/pyproject.toml

@@ -8,8 +8,8 @@ requires-python = ">=3.10"
 classifiers = ["Programming Language :: Python :: 3"]
 dependencies = [
     "core==0.2.0rc0",
-    "uvicorn==0.30.4",
-    "azure-storage-blob==12.21.0",
+    "uvicorn==0.32.1",
+    "azure-storage-blob==12.24.0",
 ]
 
 [project.optional-dependencies]

pixl_imaging/pyproject.toml

@@ -9,9 +9,9 @@ classifiers = ["Programming Language :: Python :: 3"]
 dependencies = [
     "core==0.2.0rc0",
     "aiohttp==3.10.11",
-    "alembic==1.13.2",
+    "alembic==1.14.0",
     "pydicom==2.4.4",
-    "uvicorn==0.30.4",
+    "uvicorn==0.32.1",
 ]
 
 [project.optional-dependencies]

pytest-pixl/pyproject.toml

@@ -10,17 +10,17 @@ classifiers = [
 ]
 dependencies = [
     "pydicom==2.4.4",
-    "pyftpdlib==1.5.10",
-    "pyOpenSSL==24.2.1",
+    "pyftpdlib==2.0.1",
+    "pyOpenSSL==24.3.0",
     "python-decouple==3.8",
     "pytest-loguru==0.4.0",
-    "requests==2.32.2",
+    "requests==2.32.3",
 ]
 
 [project.optional-dependencies]
 test = [
     "core==0.2.0rc0",
-    "pytest==8.3.2",
+    "pytest==8.3.4",
 ]
 dev = [
     "core[dev]==0.2.0rc0",