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@SJTU-CGM

SJTU-CGM

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  1. HUPAN HUPAN Public

    Forked from xma82/HUPAN

    Human pan-genome analysis pipeline

    C 29 6

  2. CDKAM CDKAM Public

    C++ 10 3

  3. TGSRICEPAN TGSRICEPAN Public

    The codes of "the Third Generation Sequencing of 111 rice genomes reveals a huge size of novel genome sequence in the RICE PAN-genome"

    Python 9 3

  4. PPanG PPanG Public

    a precise pangenome browser combining linear and graph-based pan-genome

    JavaScript 8

  5. HGT HGT Public

    Identification of HGTs in eukaryotic genomes

    Shell 4 1

  6. CPAN CPAN Public

    CPAN: A pan-genome based method for cancer genomics study

    Perl 3

Repositories

Showing 10 of 23 repositories
  • FIFE-HGT Public Forked from KunLiDawn/FIFE-HGT

    a Fast Identifier For Eukaryotes of Horizontal Gene Transfers

    SJTU-CGM/FIFE-HGT’s past year of commit activity
    Perl 0 1 0 0 Updated Dec 31, 2024
  • APAV Public
    SJTU-CGM/APAV’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 21, 2024
  • APAVplot Public
    SJTU-CGM/APAVplot’s past year of commit activity
    R 0 0 0 0 Updated Dec 19, 2024
  • PeanutPan Public

    PeanutPAN: Pan-genome for peanut genomics study

    SJTU-CGM/PeanutPan’s past year of commit activity
    Shell 1 0 0 0 Updated Nov 11, 2024
  • PPanG Public

    a precise pangenome browser combining linear and graph-based pan-genome

    SJTU-CGM/PPanG’s past year of commit activity
    JavaScript 8 MIT 0 0 0 Updated Jul 16, 2024
  • HGT Public

    Identification of HGTs in eukaryotic genomes

    SJTU-CGM/HGT’s past year of commit activity
    Shell 4 1 0 0 Updated Mar 7, 2024
  • TGSRICEPAN Public

    The codes of "the Third Generation Sequencing of 111 rice genomes reveals a huge size of novel genome sequence in the RICE PAN-genome"

    SJTU-CGM/TGSRICEPAN’s past year of commit activity
    Python 9 3 2 0 Updated Mar 29, 2022
  • EPAV Public

    Element Presence-Absence Variation analysis toolkit (EPAV)

    SJTU-CGM/EPAV’s past year of commit activity
    Python 1 0 0 0 Updated Feb 10, 2022
  • HGT-SIX-BATS Public Forked from RinoFeng/HGT-SIX-BATS

    Horizontal gene transfer of six high quality bats genomes.

    SJTU-CGM/HGT-SIX-BATS’s past year of commit activity
    Shell 0 1 0 0 Updated Dec 16, 2021
  • ivTerm Public
    SJTU-CGM/ivTerm’s past year of commit activity
    R 2 0 1 0 Updated May 19, 2021
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