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updates full test
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BWMac committed May 8, 2024
1 parent 901b12e commit b10786e
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Showing 2 changed files with 21 additions and 17 deletions.
3 changes: 1 addition & 2 deletions conf/test_full.config
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,5 @@ params {

// Input data for full size test
input = "${projectDir}/testdata/input_full.csv"
required_tests = "LibTiffInfoTest,BioFormatsInfoTest,OmeXmlSchemaTest"
skipped_tests = "FileExtensionTest,Md5ChecksumTest"
required_tests = "LibTiffInfoTest,BioFormatsInfoTest,OmeXmlSchemaTest,JsonLoadTest,JsonLdLoadTest,PairedFastqParityTest,TiffDateTimeTest,TiffTag306DateTimeTest"
}
35 changes: 20 additions & 15 deletions testdata/input_full.csv
Original file line number Diff line number Diff line change
@@ -1,15 +1,20 @@
url,file_type,md5_checksum
syn://syn58937898,TXT,1d6155b60405bab055527913efd734a7
syn://syn59069842,TXT,not_the_right_md5
syn://syn59095050,TIFF,c7b08f6decb5e7572efbe6074926a843
syn://syn59094930,TIFF,d817d0c76ce47b4ddc75368cfc7996ff
syn://syn59094943,TIFF,28a9ee7d0e994d494068ce8d6cda0268
syn://syn59094934,OME-TIFF,64bbfe1d1c9c171cad17b11e666b31b4
syn://syn59094932,OME-TIFF,a2550a887091d51351d547c8beae8f0c
syn://syn59094945,HDF5,93d78663da24b6a708f6c81207e4410a
syn://syn59094941,TSV,2ff237d635d9eb35e09aacda22f0417f
syn://syn59095211,CSV,72c61a50b286ff6fd3d038211426b910
syn://syn59095268,JSON,9e7f473ccbc055ef7ac800ce861a88af
syn://syn59094940,JSON-LD,56bb5f34da6d6df2ade3ac37e25586b7
syn://syn59094935,BAM,14758f1afd44c09b7992073ccf00b43d
syn://syn59094937,FASTQ,14758f1afd44c09b7992073ccf00b43d
url,file_type,md5_checksum,test
syn://syn58937898,TXT,1d6155b60405bab055527913efd734a7,good_txt
syn://syn59069842,TXT,not_the_right_md5,bad_md5_extension_txt
syn://syn59095050,TIFF,c7b08f6decb5e7572efbe6074926a843,good_tiff
syn://syn59094930,TIFF,d817d0c76ce47b4ddc75368cfc7996ff,bad_date_tag_tiff
syn://syn59094943,TIFF,28a9ee7d0e994d494068ce8d6cda0268,bad_date_time_tiff
syn://syn58937898,TIFF,1d6155b60405bab055527913efd734a7,not_a_tiff
syn://syn59094934,OME-TIFF,64bbfe1d1c9c171cad17b11e666b31b4,good_ome_tiff
syn://syn59094932,OME-TIFF,a2550a887091d51351d547c8beae8f0c,bad_xml_ome_tiff
syn://syn58937898,OME-TIFF,1d6155b60405bab055527913efd734a7,not_an_ome_tiff
syn://syn59094945,HDF5,93d78663da24b6a708f6c81207e4410a,good_hd5
syn://syn59094941,TSV,2ff237d635d9eb35e09aacda22f0417f,good_tsv
syn://syn59095211,CSV,72c61a50b286ff6fd3d038211426b910,good_csv
syn://syn59095268,JSON,9e7f473ccbc055ef7ac800ce861a88af,good_json
syn://syn58937898,JSON,1d6155b60405bab055527913efd734a7,not_a_json
syn://syn59094940,JSON-LD,56bb5f34da6d6df2ade3ac37e25586b7,good_json_ld
syn://syn58937898,JSON-LD,1d6155b60405bab055527913efd734a7,not_a_json_ld
syn://syn59094935,BAM,14758f1afd44c09b7992073ccf00b43d,good_bam
syn://syn59094937,FASTQ,14758f1afd44c09b7992073ccf00b43d,good_fastq
syn://syn58937898,FASTQ,1d6155b60405bab055527913efd734a7,not_a_fastq

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