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Merge pull request #43 from Sage-Bionetworks-Workflows/bwmac/pre-comm…
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cleans readme for pre-commit
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BWMac authored Jun 17, 2024
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Expand Up @@ -38,7 +38,7 @@ python3 -m pip install 'py-orca[all]' 'metaflow' 'pyyaml' 's3fs'

Before running the example below, ensure that the `s3_prefix` points to an S3 bucket your Nextflow `dev`
or `prod` tower workspace has access to. In the example below, we will point to the `example-dev-project-tower-scratch` S3 bucket because we will be launching our workflows within the
`example-dev-project` workspace in `tower-dev`. In this case, you can use either of the `workflows-nextflow-dev` profiles to access the S3 bucket.
`example-dev-project` workspace in `tower-dev`. In this case, you can use either of the `workflows-nextflow-dev` profiles to access the S3 bucket.
```bash
# Run the script using an example dataset
python3 demo.py run --dataset_id 'syn51514585' --s3_prefix 's3://example-dev-project-tower-scratch/work'
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