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Unittests for Pipeline #71

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This is a pretty good start. I've written tests for all the public facing methods and some of the private methods. Some tests fail because the methods they use have open issues. Parts of methods which involve getting user input haven't been tested very well yet either.

References: #25
Blocked by:
#61 (TestLinks.test_addLinks fails)
#65 (TestMisc.test_substituteColumnValues fails)
An as of yet unfiled error (TestCreateFileView.test_createFileView fails)

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