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Merging all new updates #8

Merged
merged 65 commits into from
Mar 17, 2020
Merged

Merging all new updates #8

merged 65 commits into from
Mar 17, 2020

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SarthakJariwala
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LAKESIDE\LindaT18 and others added 30 commits August 23, 2019 10:39
fix viewbox error
cea70f3
added csv handling, added ref/inpath/outpath data options
5dd9f37
disable col selection auto close
6dbf4e3
@SarthakJariwala
fix loading files for single spec as saved from microscope app, added…
28cbe55 
… 'space' delim to fix it
@SarthakJariwala
added 4th order poly fit for scattering correction, can choose b/w me…
0eebe88 
…an value corr and 4th order corr
@SarthakJariwala
Update README.md
eca3884
@SarthakJariwala
load in text file of histogram sums for plotting, old labview txt fil…
e00d96e 
…es can now be opened in this with stepsize as an input parameter
@SarthakJariwala
ui modifications, change textedit to spinbox
06ba42d
@SarthakJariwala
launch h5/pkl viewer when h5 or pkl file is loaded in FLIM Analysis, …
c44991b 
…provides more insight into data and its structure
@SarthakJariwala
launch pkl/h5 viewer for spectra scan raw and fit files
793f4bf
@SarthakJariwala
implemented much faster saving of fit file and loading fit file, opti…
04d4828 
…on to save entire model or only best fit values, minor gui changes
@SarthakJariwala
minor import statement fix
ded12b5
@SarthakJariwala
pkl view now reads lmfit ModelResult from a saved fit result file and…
a43a68b 
… will output it as such
@SarthakJariwala
implement busy cursor, fit files now have 'Scan Paramaters' and 'Ocea…
ccee7df 
…nOptics Parameters', fix export of scan images
@SarthakJariwala
minor fixes
48ddbf1
@SarthakJariwala
analyze individual spectrum fits from spectra fit file, will open mat…
78ecc3f 
…plotlibwindow for plots, and checkbox for controlling when to launch h5-pkl dataviewer
@SarthakJariwala
remove old ui file
e7c5fb5
@SarthakJariwala
add a new table view for general use, can be easily edited, selective…
c08e572 
…ly or completely saved and opened in notepad
@SarthakJariwala
comment correction
30686b9
@SarthakJariwala
minor gui fixes
c9587b4
@SarthakJariwala
fixed background correction problem for analyzing PSF, corrected usin…
f2ded3e 
…g LinearModel from lmfit as autobackground correction as part of a composite model with Gaussian Model
@SarthakJariwala
fix single spec file input, fix plot function for single spectrum
a107fea
@SarthakJariwala
auto configure wavelength range for PhotonEtc hyperspec data, no need…
72b5457 
… to input it
@SarthakJariwala
added option to smooth traces using simple boxcar width smoothening
7110331
@SarthakJariwala
create a new export plot ui window
4413533
@SarthakJariwala
parameters for export figure can now be controlled using export fig w…
2fa77a7 
…indow popup, all functionality working for X-Y plot export for two traces
@SarthakJariwala
change upper X lim auto display value
73f2011
@SarthakJariwala
inlcude export figure window for exporting images
5bf7e64
@SarthakJariwala
calculate both conditions, srv1=srv2 and srv1=0, while doing srv calc…
4532fa1 
…ulations
@SarthakJariwala
change x lower lim to include negative numbers, y lower lim is now 4 …
ae68877 
…decimals
SarthakJariwala and others added 29 commits November 5, 2019 10:14
@SarthakJariwala
set colorbar values based on min max of data
9989212
@SarthakJariwala
FIX: X,Y pixels now take np.ceil of ScanSize/StepSize
4d8d74d
@SarthakJariwala
change no of skiprows for csv loading statement
9eb4fd5
@SarthakJariwala
FIX:4th order polyfit
804727f
@SarthakJariwala
FLIM_adjust made False to make it look exactly as the data comes in
3bc7b4e
@SarthakJariwala
added .QUA file type compatibility for analysis
bda05b2
@SarthakJariwala
avg lifetime in double exponential assigned to greater of the taus an…
872da74 
…d added to srv calculation
@SarthakJariwala
Added another viewing capability for PL line scans after fitting
2270b02
@SarthakJariwala
Convert Multiple PKL files to H5 and TXT at once
7b41091
@SarthakJariwala
increase skipheader for QUA files
ceb7c6e
@SarthakJariwala
add TODO note
90278cb
@SarthakJariwala
pop up plots for spectra scans and fits
ced176b
@SarthakJariwala
some gui rearrangements
08af959
@SarthakJariwala
initial attempts at sorting 'Analyse Spectra Fits' function
74296f9
@SarthakJariwala
modified spec file
9475741
@SarthakJariwala
clean up
d591cbc
@SarthakJariwala
Merge branch 'development' of https://github.com/SarthakJariwala/Pyth…
f68fcce 
…on_GUI_apps into development
@SarthakJariwala
clean up
0c66cf3
@SarthakJariwala
added TODO
027fec1
@SarthakJariwala
adding multi-trace exporter for picoharp data
d5166ba
@SarthakJariwala
add multiple traces for export
6580ad0
@SarthakJariwala
export mulitple plots and fits to the same export plot w legend; can …
d97bcf7 
…also do from multiple files
@SarthakJariwala
changes to export window
3d5f259
@SarthakJariwala
Export mulitple plots and fits w legends from multiple files, started…
98ac680 
… fitting attempts in eV
@SarthakJariwala
changes to include fit in eV instead of nm, lmfit not able to fit it …
f102eac 
…and collect uncertainities
@SarthakJariwala
can now fit and plot spectra in eV, user bound inputs are still in nm…
7da1bb4 
… but converted to eV in the backend
@SarthakJariwala
add decimal and neg value input for x lims
4a58856
@SarthakJariwala
pop-up plot widget, expand textbrowser view
c9487fd
@SarthakJariwala
Merge branch 'master' into development
4baa92f
@SarthakJariwala SarthakJariwala merged commit 19135f2 into master Mar 17, 2020
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@SarthakJariwala