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feat: Implement literature cleaning and exporting utilities #177

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Merged
SoberPizza merged 1 commit into from
Jan 18, 2026
Merged

feat: Implement literature cleaning and exporting utilities #177

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66 changes: 53 additions & 13 deletions service/app/agents/mcp_tools.py
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Original file line number Diff line number Diff line change
Expand Up @@ -164,20 +164,60 @@ async def execute_tool_call(
f"Checking tool '{tool_name}' for injection. Schema props: {list(input_schema.get('properties', {}).keys())}"
)

if "knowledge_set_id" in input_schema.get("properties", {}):
logger.info(f"Tool '{tool_name}' requires knowledge_set_id.")
if agent:
ks_id = getattr(agent, "knowledge_set_id", None)
logger.info(f"Agent found. Knowledge Set ID: {ks_id}")
if ks_id:
args_dict["knowledge_set_id"] = str(ks_id)
logger.info(f"Injected knowledge_set_id: {ks_id} into args")
else:
logger.warning(f"Agent {agent.id} has NO knowledge_set_id bound!")
schema_props = input_schema.get("properties", {})

# Inject knowledge_set_id when tool schema supports it.
if "knowledge_set_id" in schema_props:
logger.info(f"Tool '{tool_name}' supports knowledge_set_id injection.")
effective_ks_id = None
# Prefer session-level override if available.
if session_id:
try:
from app.repos.session import SessionRepository

session_repo = SessionRepository(db)
session_obj = await session_repo.get_session_by_id(session_id)
if session_obj and getattr(session_obj, "knowledge_set_id", None):
effective_ks_id = session_obj.knowledge_set_id
logger.info(f"Using session knowledge_set_id override: {effective_ks_id}")
except Exception as e:
logger.warning(f"Failed to load session knowledge_set_id override: {e}")

if effective_ks_id is None and agent:
effective_ks_id = getattr(agent, "knowledge_set_id", None)
logger.info(f"Agent Knowledge Set ID: {effective_ks_id}")

if effective_ks_id:
args_dict["knowledge_set_id"] = str(effective_ks_id)
logger.info(f"Injected knowledge_set_id: {effective_ks_id} into args")
else:
logger.warning("No agent context available for injection!")
else:
logger.info(f"Tool '{tool_name}' does NOT require knowledge_set_id.")
logger.warning("No knowledge_set_id available for injection")

# Inject user_id when tool schema supports it.
if "user_id" in schema_props:
logger.info(f"Tool '{tool_name}' supports user_id injection.")
effective_user_id = None
if session_id:
try:
from app.repos.session import SessionRepository

session_repo = SessionRepository(db)
session_obj = await session_repo.get_session_by_id(session_id)
if session_obj and getattr(session_obj, "user_id", None):
effective_user_id = session_obj.user_id
logger.info(f"Using session user_id: {effective_user_id}")
except Exception as e:
logger.warning(f"Failed to load session user_id: {e}")

if effective_user_id is None and agent:
effective_user_id = getattr(agent, "user_id", None)
logger.info(f"Agent user_id: {effective_user_id}")

if effective_user_id:
args_dict["user_id"] = str(effective_user_id)
logger.info("Injected user_id into args")
else:
logger.warning("No user_id available for injection")

try:
result = await call_mcp_tool(refreshed_server, tool_name, args_dict)
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